Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13080 293 / 1e-93 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26310 289 / 6e-92 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 288 / 1e-91 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G57260 283 / 1e-89 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT4G13310 282 / 2e-89 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT5G25140 280 / 2e-88 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT2G24180 279 / 3e-88 CYP71B6 cytochrome p450 71b6 (.1) AT3G26320 279 / 4e-88 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48320 277 / 1e-87 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G26280 277 / 2e-87 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019157 [exp] 712 / 0 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10009903 [exp] 581 / 0 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10034397 [exp] 469 / 5e-165 AT3G26230 249 / 2e-79 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Lus10030924 [exp] 409 / 5e-138 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 403 / 7e-136 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10040120 [exp] 391 / 3e-131 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 377 / 5e-126 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012879 [exp] 377 / 2e-125 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10018263 [exp] 365 / 3e-121 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 431 / 6e-147 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 425 / 8e-145 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 420 / 1e-142 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 402 / 1e-135 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 400 / 4e-135 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 400 / 5e-135 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 398 / 2e-134 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 377 / 5e-126 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 369 / 4e-123 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.012G089900 [exp] 352 / 4e-116 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019159 pacid=23141737 polypeptide=Lus10019159 locus=Lus10019159.g ID=Lus10019159.BGIv1.0 annot-version=v1.0 ATGGATTTATTTTCCCTCGTAGCCCTTCTAGTTGTTTTTGCCCTCTGCCCTCTTGTTTTCTTGTTTACACGGCGGAGTAAGCTAATCAAATCCGCAACTG TCACCGTCGTTACGAATCTGCCCCCGGGTCCATGGAAGCTGCCGATAATCGGAAACATGCACCAACTCATCCACCCACTGCCCCACCGCCGCCTCAGAGA CATGGCCGCGAAATACGGCCCACTAATCCACCTCCAGCTTGGTCAAGTGTCGGCAGTTGTCATTTCTTCCTCGGAAATTGTGAAACACGTGATCAAAACC CACGACATCAACTTCTGCAACCGCCCCTTCCTCCTCGCTGCCAAAGTCTTATGCGACGGCGACATCGCCTTTGCACCCTACGGGGAGTACTGGCGCCAGT TACGCCGGGTATGCACCCTCGAGCTCCTCAGCTCCAGGCGGGTCAGGTCATACCGCTCCATACGCGAGCAGGAGACTGCCGGTTTCGTCCGTGAAATGGC CTCTCGGGAGGGATCGCTGACCAATTTGAGCAAGCTGATCGGTTCGTTGACCAATTCCATAACGGCTAAGGCAGCGTTCGGGAAGAAATGCGGTGAGCAG GAAGAGTTCTTGCGTCTTCTTAAGGAAGTTATGGAAGTCGGAGGTGGATTCAGTTTGCCCGATATGTTTCCTTCGTCTACATGGCTTCACGTGTTCAGCG GGGCTGAGGGTAAATTGGTCAAGATTCGTCAGAGGGCGGATAAGATACTTGGGATAATCATTGACGAGCATAGGCAAAAACAGAGTAGCAAACACTGTAC GGAGGATCTTGTGGATGTTCTACTGTCGGCTCAGAAAGAAGGGCAGATCGAATTCCCGTACGGCGGCGATACATGTCTCAAGTCCATAATCATGGAAATT TTTAGCGCTGGAACTGAGACTTCTTCCGCGACTGTTGTGTGGGCAATGACAGAGTTGCTTCGAGATCAAAGAGTGTACGAAAAGGCACAATCCGAAGTAA GGCAAATGTTCGCTGGAAGGGGAATGGTAACCGAAGAGGGACTCGAAGAACTAAAGTACCTGAAGTTGGTAGTGAAGGAAGCTTTGAGATTACACCCTCC GGCACCACTGCTTCCAAGACAAACCATAGGAGATGTTAAGATTGAAGGGTATGATATTCCAGCAAATACCAAAGTCTTGGTGAACGTTTGGGCAATTGCA AGAGATCCCAAGTATTGGGTGGAACCTGAAAGGTTTTGGCCTGAGAGGTTTATGGAAGCTAATTCGTCGGACTTCCAGGGGACTGATTTTATGTTCATGC CGTTTGGTGTTGGGAGGAGGATTTGTCCAGGTATAACATTCGGAATTGCAAACGTTGAGCTTCCCTTGGCTAGCTTGCTGTATCACTTTGACTGGAAAAC TGGAGATGGATCACCACTTGCAGATTTGGACATATCTGAATCTTCTGGTGCAACATTGATAAGGAAGCATGAACTCTGCTTGATTCCTGTTTGCCACCCT AGTTCAAATTGA
AA sequence Show only first row Show all	>Lus10019159 pacid=23141737 polypeptide=Lus10019159 locus=Lus10019159.g ID=Lus10019159.BGIv1.0 annot-version=v1.0 MDLFSLVALLVVFALCPLVFLFTRRSKLIKSATVTVVTNLPPGPWKLPIIGNMHQLIHPLPHRRLRDMAAKYGPLIHLQLGQVSAVVISSSEIVKHVIKT HDINFCNRPFLLAAKVLCDGDIAFAPYGEYWRQLRRVCTLELLSSRRVRSYRSIREQETAGFVREMASREGSLTNLSKLIGSLTNSITAKAAFGKKCGEQ EEFLRLLKEVMEVGGGFSLPDMFPSSTWLHVFSGAEGKLVKIRQRADKILGIIIDEHRQKQSSKHCTEDLVDVLLSAQKEGQIEFPYGGDTCLKSIIMEI FSAGTETSSATVVWAMTELLRDQRVYEKAQSEVRQMFAGRGMVTEEGLEELKYLKLVVKEALRLHPPAPLLPRQTIGDVKIEGYDIPANTKVLVNVWAIA RDPKYWVEPERFWPERFMEANSSDFQGTDFMFMPFGVGRRICPGITFGIANVELPLASLLYHFDWKTGDGSPLADLDISESSGATLIRKHELCLIPVCHP SSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10019159 [exp]	0	1
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	5.8	0.9261
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	13.6	0.9235
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Lus10005467 [exp]	14.7	0.9232
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	16.9	0.9253
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	22.4	0.9065
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	26.5	0.8843
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	29.7	0.8901
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	30.7	0.8944
AT1G03910			unknown protein		Lus10021530 [exp]	32.4	0.9146
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	37.6	0.8815

Compare expression of checked genes

Lus10019159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.