Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47360 407 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 160 / 9e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 155 / 4e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 151 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 147 / 7e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 148 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G64583 145 / 3e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 147 / 4e-38 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 146 / 8e-38 RPF2 rna processing factor 2 (.1) AT3G49730 145 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034396 [exp] 922 / 0 AT5G47360 406 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 159 / 5e-42 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 159 / 1e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 156 / 4e-41 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 155 / 4e-41 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015397 [exp] 150 / 4e-40 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 150 / 8e-40 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 149 / 3e-39 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 149 / 5e-39 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154901 [exp] 546 / 0 AT5G47360 429 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 161 / 3e-43 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 159 / 4e-42 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 158 / 4e-42 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 154 / 1e-40 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 152 / 3e-40 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 152 / 3e-40 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 151 / 8e-40 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G049400 [exp] 152 / 1e-39 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 151 / 1e-39 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019160 pacid=23141821 polypeptide=Lus10019160 locus=Lus10019160.g ID=Lus10019160.BGIv1.0 annot-version=v1.0 ATGTCCCTCTTTTCGGTTCCCCGTTTCCTTTCCTTCTCAATCTCCCCCGACACTTGCAAAATCTCCAGCTTGCGGTTCTACTCTTCTTTGGCTGACAAGC TCTATACTCACTTGCAAAACAATCCCAAGAACGCAGAAAGAGCTTTGAACTTAGTCAAGCCTAAATTGGATGCTGCATCTATCAATGAGGTGTTGCAAAG GTGCTCCATGAACGATTCTCTGCTGGGTCTTAGGTTTTTTGTATGGGCTGGCTGTCAGTCAAGCTATAGACATAGTTCGTACATGTATAACAATGTCTGT CAGTTGTTTAGGCTAAGGGAAAACCCTAGAGTTGTTTTGGATTTAATCCAAGCTTACAAGGCAGAGGAATTTGTGGTGAATGTCAAGACGTTCAAAGTTG TTCTTAATCTGTGCAGAGAGGTCAAGCTTGCTAGTGAGGCTCTTTTGGTGTTGAGAAATATGCCTGCCTTTAATATACGTGCTGACACTAGTGCATATAA TGTAGTTATTAGATTGTTATGTGAGAAAGGTGACTTGGCTATGGCTGACAAACTAATGGGAGAGATGGGGTTGATCGATCTCTATCCCGATATGGTCACG TATGTAACAATGATCAAAGGTTTTTGTCATGTGGGTAGACTGAAAGAAGCTTCTGGTTTGTTAAAGGTGATGAAGAGAACTGGTTGTGCACCTAACGTTG TGGTGTATTCGACTCTTCTGGATGGGATTTGCAAATACGGGAGTGTCGAAGAGGCTTTAGAATTGTTACGCCAAATGGAGAAAGAAGGAGGGAATTGTAC CCCAAATGCTGTTACCTATACCTCGTTGATTCAAAGTTTGTGTGAGAAGGGGGAGACGATTGCTGCAGTTTCCATTTTCGATAAAATGGTGGATTCTCGT GTGTCCCCTAATAGGGTGACGGTTAGTACCTTGCTCAAAGGCCTTTGTGCAGATGGTCATTTGGATGAGGCTTATAAATTGATTGATAGAGTATGCGTAG GAGGTTGGGTATCTTATGGTGAATGTTACAGCTCTCTTGTTTTGTGTTTATTGAGGATGGAGAAACTTGAGGAGGCAGAGAATGTTTTCAGAAGCCTTTT AGTAGGTGAGGGGAAACCAGACAGCCTGGCATGCAGTCTTTTGATCAGGGATCTTGTTTCAAAGACAAGGATGCTTGATGCATTTCATGTGTATAACGAA ATTGAAAAATTTAGCGATTCCGTGACTCTGGACTCTGATATCTACTCTATCTTATTGCTTGGGCTTTGCCAACAAGGTCATTTTGCAGAAGCTGCGAAAA TGGCTAGGTCGATTCGCAGAAAAGAAGTAGTGTGTCTACAATCTCCTCAGCTCCACAAACTAATTGAGCACATGGAGAAGTTTGAGGACAGAAACTAG
AA sequence Show only first row Show all	>Lus10019160 pacid=23141821 polypeptide=Lus10019160 locus=Lus10019160.g ID=Lus10019160.BGIv1.0 annot-version=v1.0 MSLFSVPRFLSFSISPDTCKISSLRFYSSLADKLYTHLQNNPKNAERALNLVKPKLDAASINEVLQRCSMNDSLLGLRFFVWAGCQSSYRHSSYMYNNVC QLFRLRENPRVVLDLIQAYKAEEFVVNVKTFKVVLNLCREVKLASEALLVLRNMPAFNIRADTSAYNVVIRLLCEKGDLAMADKLMGEMGLIDLYPDMVT YVTMIKGFCHVGRLKEASGLLKVMKRTGCAPNVVVYSTLLDGICKYGSVEEALELLRQMEKEGGNCTPNAVTYTSLIQSLCEKGETIAAVSIFDKMVDSR VSPNRVTVSTLLKGLCADGHLDEAYKLIDRVCVGGWVSYGECYSSLVLCLLRMEKLEEAENVFRSLLVGEGKPDSLACSLLIRDLVSKTRMLDAFHVYNE IEKFSDSVTLDSDIYSILLLGLCQQGHFAEAAKMARSIRRKEVVCLQSPQLHKLIEHMEKFEDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	0	1
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	1.7	0.8524
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	4.5	0.8476
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	7.4	0.8311
AT1G34630			unknown protein		Lus10034188 [exp]	7.7	0.7735
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	8.7	0.8401
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	12.6	0.8202
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	13.7	0.8253
AT3G14750			unknown protein		Lus10038143 [exp]	14.1	0.8282
AT1G06510			unknown protein		Lus10001505 [exp]	22.5	0.8059
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	22.8	0.7755

Compare expression of checked genes

Lus10019160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.