Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28510 426 / 1e-151 ATPHB1 prohibitin 1 (.1) AT1G03860 414 / 3e-147 ATPHB2 prohibitin 2 (.1.2.3) AT2G20530 412 / 2e-146 ATPHB6 prohibitin 6 (.1.2) AT5G44140 390 / 1e-137 ATPHB7 prohibitin 7 (.1) AT5G40770 271 / 8e-91 ATPHB3 prohibitin 3 (.1) AT3G27280 268 / 1e-89 ATPHB4 prohibitin 4 (.1.2) AT5G14300 218 / 3e-70 ATPHB5 prohibitin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034395 [exp] 502 / 0 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10042515 [exp] 458 / 2e-164 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 456 / 8e-164 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10032072 [exp] 263 / 8e-88 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 263 / 9e-88 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10035521 [exp] 164 / 4e-49 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 131 / 3e-37 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134700 [exp] 426 / 1e-151 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 419 / 3e-149 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.017G065800 [exp] 273 / 1e-91 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.001G335700 [exp] 270 / 1e-90 AT5G40770 429 / 3e-153 prohibitin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10019161 pacid=23141798 polypeptide=Lus10019161 locus=Lus10019161.g ID=Lus10019161.BGIv1.0 annot-version=v1.0 ATGAATGCCAAGAAGATGAATCAAGCCCCCGGAGGATCTCTGTTGGTCAAGATCGGAGTTGCCGCCGGGGTTGTTATTTACGCTGCTGCTAACAGCCTCT ACAATGTCGAAGGTGGCCACCGTGCCATCGTCTTCAACCGGTTTACTGGTGTCAAAAACAAGGTTTTTCCAGAAGGAACCCACTTCCTTTTTCCCTGGTT TGAGCGGCCGATCATCTATGACGTCCGCGCTCGACCTCACCTTGTCGATAGTACATCTGGAAGCCGTGATCTTCAAATGGTCAAGATTGGGCTCCGGGTG CTTACACGTCCCCAGGCTGACCAGTTGCCAACAATCTATAGAACTGTCGGTGTGAATTACAATGAGAGAGTGCTACCTTCCATCATTCACGAAACACTGA AATCTGTGGTTGCACAGTACAATGCCAGCCAGCTCATTACTCAAAGAGAGGCTGTTAGCAGGGAGATAAGGAAGATCCTTACAGAGAGGGCAGCTTTTTT CAACATTGCTCTGGATGATGTGTCCATAACTAACCTCACATTTGGCAAAGAGTTCACAGCTGCAATTGAGTCAAAACAAGTGGCTGCTCAGGAGGCCGAG AGGGCCAAGTTTGTTGTGGAGAAGGCTGAACAGGACAAGAGAAGTGCTATTATCAGAGCCGAGGGTGAAGCCAAGAGTGCTCAGCTGATTGGACAAGCAA TTGCAAGCAACCCAGCTTTCATCACGCTGAGGAAGATAGAAGCTGCGAGAGATATCGCTCAAACCATGAAGAACTCGTCAAACAAGGTGTATCTGGACTC CAGTGATTTGCTGCTAAACCTGTCCGACATGGATATGCTTGCTTCTGGGAAGAATGTCGCTGTCTGA
AA sequence Show only first row Show all	>Lus10019161 pacid=23141798 polypeptide=Lus10019161 locus=Lus10019161.g ID=Lus10019161.BGIv1.0 annot-version=v1.0 MNAKKMNQAPGGSLLVKIGVAAGVVIYAAANSLYNVEGGHRAIVFNRFTGVKNKVFPEGTHFLFPWFERPIIYDVRARPHLVDSTSGSRDLQMVKIGLRV LTRPQADQLPTIYRTVGVNYNERVLPSIIHETLKSVVAQYNASQLITQREAVSREIRKILTERAAFFNIALDDVSITNLTFGKEFTAAIESKQVAAQEAE RAKFVVEKAEQDKRSAIIRAEGEAKSAQLIGQAIASNPAFITLRKIEAARDIAQTMKNSSNKVYLDSSDLLLNLSDMDMLASGKNVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	0	1
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	5.3	0.8808
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	6.5	0.8774
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10007211 [exp]	7.0	0.8413
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	8.9	0.8784
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	10.0	0.8863
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	11.8	0.8767
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	14.0	0.8519
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	16.6	0.8849
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	18.8	0.8725
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	19.6	0.8229

Compare expression of checked genes

Lus10019161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.