Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 1422 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 739 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 543 / 5e-174 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19930 117 / 3e-26 RNA-dependent RNA polymerase family protein (.1) AT2G19910 114 / 2e-25 RNA-dependent RNA polymerase family protein (.1) AT2G19920 107 / 3e-23 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042134 [exp] 752 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 546 / 4e-179 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10034262 [exp] 520 / 8e-176 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10002017 [exp] 548 / 2e-175 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 429 / 1e-137 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034391 [exp] 177 / 4e-52 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 174 / 7e-51 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 101 / 2e-21 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136100 [exp] 1659 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 1345 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 1326 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 1305 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 784 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.018G028100 [exp] 551 / 5e-177 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 542 / 2e-173 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.007G081300 [exp] 133 / 2e-31 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 130 / 1e-30 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10019164 pacid=23141770 polypeptide=Lus10019164 locus=Lus10019164.g ID=Lus10019164.BGIv1.0 annot-version=v1.0 ATGGGGAAGACAGTGCAAGTCTATGGATTTCCATCTGGTGTTACTGCTGAAGGAGCTAAGAGTTTCTTGGAAAGGCATACGGGTTCCGGTACAGTTGAGG CTCTTAAGATGAGGCAGGGAAAGAATGGCGGTCCGAGATCTTACGCCATAGTTCAGTTCAGCACCATTGAAAAGGCTGCGTACATTATTTCAATGAACAG GCAACTATACTATGGAACTTCCTATTTACAGATGAGACCCCTTGATCTTGACATTATACCGAAGCCAAGGACCTATCTTCATGTCATTGAAAGTGCAGTG CTCCACGTTGGATGTCAAACATCAGTCGATAAGTTCTCCGACCTGTGGAGATCGACTGATGTTTTGACCCGATTTGGACAAGGGTTGAGGAAGTTGCATT TCATGCTTTCTCACCATGGAACTGAATACAGGCTTGACCTATTGTACGATAACATTTGGCAGATTGAGCTACATCGTCCTCGTGGTCAATCAGTGAAGTA TCTTGTTTTTCAGTTATTTGGTGCACCTCGGATTTTCAAAAGAGATCTGCGTTTAAGCGCATTGGATAGTCTTGTTCGGAATTACTTCAAGGATGGCTCC GACGATCAGTGGGTTAGGACGACTGACTTCACACCATCTTGCCGTATTGGACATGCATCTGCACTGTGTCTCGAAGTTCATCGGGATTTTCAGCTTCCCA ATTTGGCAGAGAACTTTGCATATTACAAAGACACTGATGGAAAATTTACTGTGGAAAGTGGCTTTACCTTTTCACAAAATCCTACCCTTGTCCCTATCAT TGGTCCTCCCCCCGGGGTTCGTGTACCATACGAAATGATCTTCAAAGTCAGTATGCTGGTTCAGAACGGATGCCTTCCTGGTCCTTCGCTGGATGCTAAC TTCTACAAGCTTATTGATCCTCAGAGATTCCCACTTGTCTGCATAGAGAATGCGCTTGAGAAGCTTTACTACATGAAGGAATGCTGTTATGAACCTTCAA AGTGGCTTCAAGAGCAGTACACAAAGTATATCAGTTCTCCATCTCAAAGGCTGCCGAAATCACCCTCCATATCACTGGAAGACGGTCTGGTATATGTGCA TCGGATTCAGATAACTCCTTGTAAAGTCTACTTCTCGGGGCCCGAGGTTAACGTTTCAAATCGAGTTTTGCGCCATTTTTCAGGAGATATCTGTAACTTC ATCCGTGTTTCGTTTGTGGATGAAGAGTTGGAGAAGATACATTCCAACGATGTGGCCCCGCGTGGCTCTTCCACGAGTGATGCTAAGAGAAGTTGTATTT ATAACAGGATTCTATCTACCTTATGTAACGGTATAGTTGTTGGTGGAAAGAAGTTTGAGTTTCTGGCTTTCTCATCCAGCCAGCTTAGGGAAAACTCTTG CTGGATGTTTGCTTCAAGAATTGGCTTATCCGCTGGCGATATAAGAGACTGGATGGGAAATTTTCGCGAAATAAAAAATGTTGCCAAGTATGCTGCCAGA TTGGGTCAATCTTTTGGTTCATCTACTGAGACTCTTAGTGTTGGTAAAGAAGATTCTGAAGTTATTCCTGACATAGAGGTGACAAGTGGGGGAACTAAGT ATACATTTTCAGATGGGATAGGTAAGATTTCTGCGCAATTTGCGAAGAGAGTTGCAGCAAAGTGTCATTGTAATTCTTCTATACCATCAGCATTTCAGAT TCGATATGGCGGGTATAAAGGCGTTGTAGCAGTGGATCCAACTTCGTCGAAGAAATTGTCTCTTAGAAAGAGTATGTGCAAATATGAGTCTGATAACATA AAGCTGGATGTGTTGGCTTATAGCAAGTATCAGCCTTGCTTTATGAACCGTCAATTGATCACTCTTCTTTCGACACTAGGCATTCCTGACCATATTTTCG AGAAGAAGCAAAAAGAAGCTGTGGATCAACTCGATGCAATTCTGATGAATCCGTCAATTGCAATGGAAGCTTTGGAGTTGATGCCTATGGGAGAGTTAAC CAACGTTTTGAAGGATATGCTAATCTGTGGATATAAACCTGGTGATGAACCTTTTCTTTCAATGATACTTCAGAATTTCCGGGCTTCAAAGTTGCTTGAT ATTCGGACGAAATCAAGGGTATTTCTTCAGAAAGCAAGATCTATGATGGGATGTCTGGATGAAACAAGAACTCTGGAGTATGGTGAAGTCTTCGTACAGT TTTCTGGTAGTGGAAATGGACTATATTCCAAAAATGATGTAGCAAGATGCTCAATTCTCATGGGAAAAGTTGTAGTAGCTAAAAATCCTTGCTTGCACCC GGGCGATATACGTGTGCTAAGGGCTGTTGATGTCCCAGCGTTGCATCATATGGTGGATTGTGTTGTTTTTCCACAAAAAGGACCTAGACCACATCCAAAC GAATGTTCAGGAAGTGACTTGGATGGAGATATCTATTTTGTTTGCTGGGATCCTGAACTAGTTCCTTCTCGGCAAATTGCACCGATGGATTATACACCTC CACCAACTGTCCAGCTAGATCATGATGTTACCATTGAGGAAGTGGAAGAATACTTCACCAACTACATAGTGAATGACAGTCTAGGAATAATTGCAAATGC TCACATCGCTTTTGCAGACAAGGAGCCGCTGAAAGCCATGAGCGAAGAATGCTTAGAGCTTGCAAAGAAGTTCTCGATAGCAGTCGATTTCCCGAAAACG GGGGTTCCAGCTGAGATACCTCCTCATCTCTACGTCAAAGAATACCCTGACTTCATGGAAAAGCCCGACAAGCCAACATATCAATCCAACAATGTGATCG GGAAGCTATTTCGAGAAGTGAAAGACATTGCACCACACACCGCCTGTGTCAGGTCCTTCACTCTGCAAGTGGCTCGCCAGTGTTACGACCCTGACATGGA AGTCGATGGCTTCGAACGTTACTTGCACGATGCCCACTACTACAAAAGCAATTATGACTACAAGTTGGGGAACCACATGGACTACTACGGAATCAAAACC GAAGCTGAAATGCTGAGCGGGAACATCATCAAGATGTCCCGTGCGTTTACCAAGAGAAGAGATTCCGAGGCAATATCAATGGCGGTAAGATCATTGAAGA AAGAAGCAAGGTCGTGGTTCAATGAGAAGGGAAGTAATTTGGATGCAGAAGATGATGATGATGATGTGTATGCCAAAGCATCTGCTTGGTACCATGTTAC ATATCATCCGGACTACTGGGGTCAGTACAACGAGGGAATGAACCGACCTCACTTTTTTAGCTTTCCATGGTGTGTATATGAAAAACTGATCCAGATCAAG AAGAATAAGAGGAAGATGGCAGCTCGAATGTCATCGCTGGAACGACAGCTTCAGCTTGGATTGCGGTTAAGCTAG
AA sequence Show only first row Show all	>Lus10019164 pacid=23141770 polypeptide=Lus10019164 locus=Lus10019164.g ID=Lus10019164.BGIv1.0 annot-version=v1.0 MGKTVQVYGFPSGVTAEGAKSFLERHTGSGTVEALKMRQGKNGGPRSYAIVQFSTIEKAAYIISMNRQLYYGTSYLQMRPLDLDIIPKPRTYLHVIESAV LHVGCQTSVDKFSDLWRSTDVLTRFGQGLRKLHFMLSHHGTEYRLDLLYDNIWQIELHRPRGQSVKYLVFQLFGAPRIFKRDLRLSALDSLVRNYFKDGS DDQWVRTTDFTPSCRIGHASALCLEVHRDFQLPNLAENFAYYKDTDGKFTVESGFTFSQNPTLVPIIGPPPGVRVPYEMIFKVSMLVQNGCLPGPSLDAN FYKLIDPQRFPLVCIENALEKLYYMKECCYEPSKWLQEQYTKYISSPSQRLPKSPSISLEDGLVYVHRIQITPCKVYFSGPEVNVSNRVLRHFSGDICNF IRVSFVDEELEKIHSNDVAPRGSSTSDAKRSCIYNRILSTLCNGIVVGGKKFEFLAFSSSQLRENSCWMFASRIGLSAGDIRDWMGNFREIKNVAKYAAR LGQSFGSSTETLSVGKEDSEVIPDIEVTSGGTKYTFSDGIGKISAQFAKRVAAKCHCNSSIPSAFQIRYGGYKGVVAVDPTSSKKLSLRKSMCKYESDNI KLDVLAYSKYQPCFMNRQLITLLSTLGIPDHIFEKKQKEAVDQLDAILMNPSIAMEALELMPMGELTNVLKDMLICGYKPGDEPFLSMILQNFRASKLLD IRTKSRVFLQKARSMMGCLDETRTLEYGEVFVQFSGSGNGLYSKNDVARCSILMGKVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGPRPHPN ECSGSDLDGDIYFVCWDPELVPSRQIAPMDYTPPPTVQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHIAFADKEPLKAMSEECLELAKKFSIAVDFPKT GVPAEIPPHLYVKEYPDFMEKPDKPTYQSNNVIGKLFREVKDIAPHTACVRSFTLQVARQCYDPDMEVDGFERYLHDAHYYKSNYDYKLGNHMDYYGIKT EAEMLSGNIIKMSRAFTKRRDSEAISMAVRSLKKEARSWFNEKGSNLDAEDDDDDVYAKASAWYHVTYHPDYWGQYNEGMNRPHFFSFPWCVYEKLIQIK KNKRKMAARMSSLERQLQLGLRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	0	1
					Lus10032559 [exp]	1.7	0.8554
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	2.4	0.8516
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	4.5	0.8212
AT1G06510			unknown protein		Lus10001505 [exp]	4.9	0.8524
AT1G67170			unknown protein		Lus10030976 [exp]	5.3	0.8304
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	6.6	0.8515
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	7.5	0.8298
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	11.4	0.8392
AT2G40390			unknown protein		Lus10010225 [exp]	11.5	0.7897
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	15.4	0.8057

Compare expression of checked genes

Lus10019164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.