Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041663 [exp] 137 / 2e-42 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019165 pacid=23141824 polypeptide=Lus10019165 locus=Lus10019165.g ID=Lus10019165.BGIv1.0 annot-version=v1.0 ATGTCCTCTGCAATCATAATCTTCTTTGTTACGTTCATCCTTGTCCAAACCGTCTCTGCCAGAAGGAACTTGCTTCAAGCAGGTTCCTCCGACACGGGAT CTCCCCAAACTGGGTATGGCGAAGAGAAGGGCGACGACGGGAGTAAAAGCGGGGTACAGAGGAGCGAATCCCGGGACTCTGGCTCAGCCAACGGCGATAG GTCTCCCACCGCCGGGACTGTACAAATGCCGCCGCCCACGGCAGTGACTAGTGTCTCCTACAATACTGGTGGAGATTCCAACAACAACAATAATTACCAG CCATCATCGTCTAGTGCTCAAGACGAATATTCATCACCTGAAAATTACGGATATGGTCAGGGTGGATCCGGCGGGTCGTATACCTCGCCGTTTCCTAGAA ACAGTGACACCTACGGTCCACCGTAA
AA sequence Show only first row Show all	>Lus10019165 pacid=23141824 polypeptide=Lus10019165 locus=Lus10019165.g ID=Lus10019165.BGIv1.0 annot-version=v1.0 MSSAIIIFFVTFILVQTVSARRNLLQAGSSDTGSPQTGYGEEKGDDGSKSGVQRSESRDSGSANGDRSPTAGTVQMPPPTAVTSVSYNTGGDSNNNNNYQ PSSSSAQDEYSSPENYGYGQGGSGGSYTSPFPRNSDTYGPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019165 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	1.0	0.9456
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	2.4	0.9109
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	3.7	0.9039
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10003156 [exp]	5.5	0.8820
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	6.0	0.9026
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	6.7	0.9080
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	9.2	0.9069
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	10.7	0.8897
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	10.8	0.9089
					Lus10016134 [exp]	12.5	0.8845

Compare expression of checked genes

Lus10019165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.