Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25640 227 / 5e-74 Protein of unknown function, DUF617 (.1) AT5G23100 211 / 1e-67 Protein of unknown function, DUF617 (.1) AT2G41660 186 / 1e-57 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT4G39610 168 / 4e-51 Protein of unknown function, DUF617 (.1) AT5G06990 164 / 9e-50 Protein of unknown function, DUF617 (.1) AT2G21990 161 / 2e-48 Protein of unknown function, DUF617 (.1) AT5G42680 150 / 3e-44 Protein of unknown function, DUF617 (.1.2) AT2G37880 147 / 5e-43 Protein of unknown function, DUF617 (.1) AT1G21050 137 / 2e-39 Protein of unknown function, DUF617 (.1) AT1G76610 124 / 2e-34 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034386 [exp] 365 / 2e-128 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 207 / 2e-66 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 205 / 1e-65 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 201 / 5e-64 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 201 / 2e-63 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 193 / 3e-60 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 169 / 1e-50 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 165 / 6e-49 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 156 / 2e-46 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131600 [exp] 259 / 9e-87 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 251 / 1e-83 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 241 / 7e-80 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 240 / 1e-79 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 192 / 2e-60 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 182 / 1e-56 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 170 / 6e-52 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 169 / 2e-51 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 165 / 6e-50 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 160 / 3e-48 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10019166 pacid=23141774 polypeptide=Lus10019166 locus=Lus10019166.g ID=Lus10019166.BGIv1.0 annot-version=v1.0 ATGGCTGCCAAGTCTTCGCACGATTCCTCCGTCTCCTTGTCCAAACGCTACTTCAACAACTGGACGAAGAAGAAAACCCTCCTCCAACCCCAACATGAAC AAGAAGAGGAAGAAGATGATCAAATCATCCTCACTAACCTCCGCTCCTCTTCTCAGCACTACACGGCTTCCGACTACCAACTTCCAGATCCCCAACCTTA CCCAAAACCCAAGAAGAAGAACAACAACAATCTCTCCACCAAGCTCCGATCAGCCCTCACTGTTTTCGGCGGCTGTCGGACTTCGGGGCAGAGAACCAAA GTGGTGGGGACTCTGTTCGGGTACCGGAGGGGGCATGTCCGGTTCGCGTTTCAGGAGGATCTGAGGCAGAGGCCGGCGTTCCTTATCGAGATGGCCACTC CGACGAGCGTGCTCGTCAGGGAGATGGCGTCCGGGCTGGTGAGGATCGCGCTGGAATGCGAAAAGAGTAGTAATGGTGACAAGAAGGAGAAGAAGGTGAA GCTGGTGGAGGAAGGGATGTGGAGGAGCTACTGTAACGGGAAGAAATGCGGGTATGCGGTGAGGAGGGAGTGTGGGGAGGAGGAGTGGAGGGTTCTGAGG GCGGTGGGGCCGATCTCGATGGGTGCCGGAGTTTTGCCGGCGGCGGAGGAGGAGGGGGAATTAGTTGACGGTGGGGGGAATGATGGGGAGCTGATGTACA TGAGGGCGAGGTTCGAGAGGGTTGTTGGTTCAAAGGATTCTGAAGCGTTTTACATGATGAATCCTGATGGATCCGGCGGACCTGAGCTCAGTCTCTACTT GCTTAGAGTTTAG
AA sequence Show only first row Show all	>Lus10019166 pacid=23141774 polypeptide=Lus10019166 locus=Lus10019166.g ID=Lus10019166.BGIv1.0 annot-version=v1.0 MAAKSSHDSSVSLSKRYFNNWTKKKTLLQPQHEQEEEEDDQIILTNLRSSSQHYTASDYQLPDPQPYPKPKKKNNNNLSTKLRSALTVFGGCRTSGQRTK VVGTLFGYRRGHVRFAFQEDLRQRPAFLIEMATPTSVLVREMASGLVRIALECEKSSNGDKKEKKVKLVEEGMWRSYCNGKKCGYAVRRECGEEEWRVLR AVGPISMGAGVLPAAEEEGELVDGGGNDGELMYMRARFERVVGSKDSEAFYMMNPDGSGGPELSLYLLRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25640			Protein of unknown function, D...		Lus10019166 [exp]	0	1
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	2.6	0.8652
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	6.9	0.8793
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	11.6	0.8751
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	13.7	0.8735
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	14.8	0.8782
AT2G18890			Protein kinase superfamily pro...		Lus10006957 [exp]	15.9	0.8269
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	18.5	0.8623
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10008083 [exp]	23.1	0.8472
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	23.7	0.8672
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	24.4	0.8026

Compare expression of checked genes

Lus10019166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.