Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68050 896 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 731 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 669 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G51550 107 / 2e-24 Kelch repeat-containing F-box family protein (.1) AT5G58140 96 / 2e-20 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 85 / 1e-16 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G02710 78 / 3e-15 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT5G04420 70 / 2e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G18610 69 / 4e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 67 / 3e-11 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029002 [exp] 1134 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 916 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 914 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 739 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 722 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 716 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 565 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10034827 [exp] 106 / 5e-24 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 105 / 9e-24 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105700 [exp] 921 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 915 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 757 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 749 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G252200 [exp] 123 / 7e-30 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 120 / 7e-29 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 92 / 7e-19 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 91 / 7e-19 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 91 / 1e-18 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.005G013000 [exp] 74 / 2e-13 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10019169 pacid=23141728 polypeptide=Lus10019169 locus=Lus10019169.g ID=Lus10019169.BGIv1.0 annot-version=v1.0 ATGTCGATAAGGGAAGAAATGGAGGAATCCGACGAGCAACTATACGGTGGCGGAGGAGCTACGCAGAAGAAGCGGAAATTTACGAAAACGGTCGAAGTAG ACAATGAGGAAGAAGGTGAAGAGGAGCAAGAATTCTCCGACGAAGAAGACTCTGAGCTGTCGTTCGACTCGAATCTCTTCTTCTACCCTACGACGCCGAC TTCCTTCGTCGTTTCCGATGCCCAGGAGCCTGATTTCCCCATCATCTACGTCAACAAGGTCTTCGAGATCTCCACCGGCTACCGCGCTCATGAAGTCCTC GGCCGCAACTGCCGGTTCTTGCAGTACAGGGATCCGCGAGCTCAGAGGCGGCACCCGCTGGTGGATCCGGTGGTTGTTTCCGAGATGAGGAGGTGTATTG ACGAAGCTATTGAATTCCAAGGGGAGCTTTTGAATTTCAGGAATGACGGGACTCCTTTAGTGAACAGGTTAAGGCTAATGCCTATCCACGACGATGAAGG TACTATAACACATATTATTGGGATTCAAGTGTTTTTGGAAGCCAACATCGATCTCGATCGCCTTTCGTATCCTGTTTTCAAGGAGAGCTACTACTGTGAG AATGAGTCATCAGCAGCTAGGAGAAACTGTGCTCTTCCTTTAGCTGACAATTTCCAGCCTCAGGTTAAAGAGGAATTGTGCAGGATTCTTGAGTTGTCTG ATGAGGTTTTGGCTCAAAATATTCTATCCCGGTTGACACCGAGAGATGTCGCATCAATTGGATCCGTGTGCAGGAGGATTCGCCAGCTGACGAAGAACGA ACATGTGAGGAAGATGGTTTGCCAGAATTCTTGGGGGAGGGAAGTCACGGGCGCTCTAGAGTCGACGATGATGACGAAGAAGCTTGCTTGGGGGAGGCTG GCTAGGGAGCTGACGACTCTCGAGGCTGCGTGCTGGAGGAAACTGACAGTTGGGGGAGCAGTTGAGCCTTCTCGTTGCAATTACAGTGCGTGTGCAGCCG GTAACAAGCTCGTGTTGTTCGGCGGGGAAGGTGTCGATATGCAGCCCATGGATGACACGTTTGTGCTGAATCTCGATGCAGCTACTCCAGCATGGCAGAG GGTGAGTGTGGAATCGTCCCCACCCGGACGGTGGGGCCATACCCTTTCGTCCTTCAACGGTTCTTCTCTCGTGGTGTTTGGTGGATGCGGAAGGCAAGGG TTACTCAACGATGTCTTTGTGCTTGACTTGGACGCCAAGCAACCGACTTGGAAAGAAGTCTCGGGAGGAACACCAGCACCACTTCCGAGGTCTTGGCATA GCTCCTGCACAATCGAAGGCTCGAAACTCGTCGTTTCCGGTGGATGCACAGATGCAGGAGTACTGCTTAGTGACACTTACTTGTTGGATCTCACTACTGA GAAACCAACTTGGAAAGAGGTTCCTACTAACCGACCACCGCCATCTCGACTGGGACATTCGCTCTCTGTTTATGGCGGGACAAATGTTCTGATGTTTGGC GGTCTGGCCAAGAGCGGTCACGTGCAGTTGAGATCGGGGGACGCATATTCCGTCGATCTTGGAGATGAAAGGCCGGAATGGAGGCAACTCGATTGTTCGG CATATAGCGGGGGTGGAAGCCAGAGTTGTGTGGTTCCGCCTCCCAGACTTGATCATGTTGCTGTTAGCATGCCCTGTGGGAGGATTATAATCTTTGGTGG TTCGATTGCTGGGTTGCATTCTCCTTCGCAGCTTTTTTTGTTGGATCCAGCTGACGAGAAGCCCTCGTGGAGAGCGCTCAGCGTTCCTGGGCAGCCACCG AAATTCGCGTGGGGCCATAGTACTTGCGTAGTTGGAGGGACTAGGGTGCTGGTGTTGGGTGGGCATACAGGGGAGGAATGGATACTTAACGAGTTGCATG AATTATGCTTGGCAACCCGGCAAGACGTAGATGCTTAG
AA sequence Show only first row Show all	>Lus10019169 pacid=23141728 polypeptide=Lus10019169 locus=Lus10019169.g ID=Lus10019169.BGIv1.0 annot-version=v1.0 MSIREEMEESDEQLYGGGGATQKKRKFTKTVEVDNEEEGEEEQEFSDEEDSELSFDSNLFFYPTTPTSFVVSDAQEPDFPIIYVNKVFEISTGYRAHEVL GRNCRFLQYRDPRAQRRHPLVDPVVVSEMRRCIDEAIEFQGELLNFRNDGTPLVNRLRLMPIHDDEGTITHIIGIQVFLEANIDLDRLSYPVFKESYYCE NESSAARRNCALPLADNFQPQVKEELCRILELSDEVLAQNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNSWGREVTGALESTMMTKKLAWGRL ARELTTLEAACWRKLTVGGAVEPSRCNYSACAAGNKLVLFGGEGVDMQPMDDTFVLNLDAATPAWQRVSVESSPPGRWGHTLSSFNGSSLVVFGGCGRQG LLNDVFVLDLDAKQPTWKEVSGGTPAPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTEKPTWKEVPTNRPPPSRLGHSLSVYGGTNVLMFG GLAKSGHVQLRSGDAYSVDLGDERPEWRQLDCSAYSGGGSQSCVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPADEKPSWRALSVPGQPP KFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLATRQDVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	0	1
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	1.0	0.8497
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	5.7	0.7785
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	6.5	0.7711
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	11.0	0.7542
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	15.9	0.7178
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	24.5	0.6766
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	25.1	0.7333
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	28.6	0.6559
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	28.6	0.6997
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	29.1	0.5912

Compare expression of checked genes

Lus10019169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.