Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14830 1098 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 998 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 931 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 863 / 0 ADL1B DYNAMIN-like 1B (.1) AT5G42080 862 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT2G14120 271 / 7e-81 DRP3B dynamin related protein (.1.2.3) AT4G33650 256 / 4e-75 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 214 / 1e-59 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 214 / 2e-59 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60500 130 / 2e-31 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029001 [exp] 1158 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 964 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 886 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 874 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 855 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10030255 [exp] 842 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10023073 [exp] 842 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 838 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10014041 [exp] 247 / 9e-72 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105900 [exp] 1125 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G135100 [exp] 992 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 987 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 972 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 899 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 879 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 877 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.007G118300 [exp] 262 / 5e-77 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 259 / 4e-76 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.019G068700 [exp] 211 / 2e-58 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10019170 pacid=23141822 polypeptide=Lus10019170 locus=Lus10019170.g ID=Lus10019170.BGIv1.0 annot-version=v1.0 ATGGCAACGATGGAGAGCTTGATCGGACTAGTCAACAGGATCCAGAGAGCGTGTACTGTATTGGGAGATCATGGAGGTGGTGGTGAAGGCATGTCCCTCT GGGAGGCTCTTCCTTCTGTTGCCGTCGTCGGAGGCCAGAGTTCGGGGAAATCGTCCGTGCTTGAAAGCGTGGTCGGCAGAGATTTTCTGCCTCGTGGATC TGGCATTGTTACTCGGAGGCCACTAGTGTTGCAACTTCACAAGTTAGAGGATGGACGTGCCTCTGATTATGCGGAGTTCCTTCATGCACCGAGGAAGAAG TGGACCGATTTTGCTGCTGTGCGAAAGGAGATCGCTGATGAAACAGATCGTATAACTGGGAAGTCGAAGCAGATATCAAACATACCAATTCATCTAAGCA TATACTCTCCGAATGTTGTCAATTTAACCCTCATAGATCTTCCTGGGTTGACAAAAGTTGCCGTAGAGGGTCAGCAAGAAAGTATTGTTGAAGATATTGA AAACATGGTCCGCTCGTATGTTGAGAAGCCCAATAGTATCATATTGGCCATTTCTCCAGCAAATCAAGATATCGCCACATCAGATGCCATAAAACTTGCA CGAGAAGTTGATCCTACAGGTGAACGAACGTTTGGTGTGTTGACAAAGATTGATTTGATGGATAAAGGAACCAATTGTTTGGATGTTCTTGAAGGAAGGT CATACAGATTGCAACATCCATGGGTTGGAATTGTTAATCGCTCTCAAGCTGATATCAACAAGAACGTTGATATGATTGTTGCACGTAGAAAGGAGCGGGA GTATTTTGAAACAAGCCCAGAGTACGGTCATTTGTCGAGCAAAATGGGAGCTGAATATCTTGCAAAGCTTTTATCTAAGCATTTAGAGACGGTCATCAGG CAGCGCATACCAAGCATTATTGCCTTGATAAACAAGACAATTGATGAGATCAATGGAGAGTTGGACCGGATTGGCAGGCCTATTGCCGTGGACTCAGGGG CACAGCTTTACACCATTCTTGAACTATGTCGTGCATTTGACCGCGTATTTAAGGAGCACCTTGATGGGGGGCGTCCTGGAGGAGATCGCATTTATGGGGT TTTTGATCATCAGTTACCTGCTGCATTGAAGAAGTTACCATTTGACCGTCATCTGTCTACGAAAAATGTTCAGAAAGTTGTCTCAGAAGCTGATGGTTAC CAGCCACATTTAATTGCTCCTGAGCAGGGATACAGAAGGCTGATTGATGGATCCATCAGCTTTTTCAAAGGCCCAGCTGAAGCCTCTGTCGATGCTGTGC ATTTTATTTTGAAGGAACTTGTGCGGAAGTCAATAGCCGAAACAGAGGAATTGAAGCGTTTCCCAACGCTGCAGGCTGACATTGCTGCTGCTGCTAATGA ATCCCTGGAAAGGTTCCGTGATGATAGCAGAAAAACAGTTATACGGCTAGTGGACATGGAATCTAGCTACTTGACGGTAGAATTTTTCCGTAAACTTCAG CTCGAGCCAGACAAGGCGTCAAACCCAAAAGAAAACCCAAATTCATCTGTCCCAGCTGCTGACCGCTATGCTGATTATCACTTCAGGAGGATCGGATCAA ACGTGAATGCTTACATTAACATGGTGTGCGATACATTGAGGAACTCGATCCCAAAGGCTGTCGTTTATTGTCAGGTCCGAGAGGCCAAGCGATCCCTTCT CAATTACTTCTACACTCAAATTGGGAGACGAGAGAAGGAGCAGCTCGGTGCGATGCTGGACGAAGACCCGCAATTGATGGAAAGGAGGACACAGCTCTCG AAAAGGCTGGAACTGTACAAATCGGCCAGGGACGAAATCGATTCAGTTGCTTGGAAATGA
AA sequence Show only first row Show all	>Lus10019170 pacid=23141822 polypeptide=Lus10019170 locus=Lus10019170.g ID=Lus10019170.BGIv1.0 annot-version=v1.0 MATMESLIGLVNRIQRACTVLGDHGGGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKLEDGRASDYAEFLHAPRKK WTDFAAVRKEIADETDRITGKSKQISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVEDIENMVRSYVEKPNSIILAISPANQDIATSDAIKLA REVDPTGERTFGVLTKIDLMDKGTNCLDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFETSPEYGHLSSKMGAEYLAKLLSKHLETVIR QRIPSIIALINKTIDEINGELDRIGRPIAVDSGAQLYTILELCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSTKNVQKVVSEADGY QPHLIAPEQGYRRLIDGSISFFKGPAEASVDAVHFILKELVRKSIAETEELKRFPTLQADIAAAANESLERFRDDSRKTVIRLVDMESSYLTVEFFRKLQ LEPDKASNPKENPNSSVPAADRYADYHFRRIGSNVNAYINMVCDTLRNSIPKAVVYCQVREAKRSLLNYFYTQIGRREKEQLGAMLDEDPQLMERRTQLS KRLELYKSARDEIDSVAWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10019170 [exp]	0	1
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	1.0	0.9035
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10018921 [exp]	4.0	0.8879
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	4.9	0.8859
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	11.2	0.8639
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	12.2	0.8794
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	13.4	0.8545
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	14.8	0.8761
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	16.0	0.8415
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	18.0	0.8230
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	18.5	0.8541

Compare expression of checked genes

Lus10019170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.