Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69160 67 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036813 [exp] 411 / 3e-145 AT1G69160 80 / 4e-17 unknown protein Lus10026677 [exp] 111 / 2e-28 AT1G69160 62 / 9e-11 unknown protein Lus10004639 [exp] 107 / 3e-26 AT1G69160 55 / 4e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154200 [exp] 111 / 3e-28 AT1G69160 114 / 2e-29 unknown protein Potri.008G098200 [exp] 102 / 7e-25 AT1G69160 134 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019172 pacid=23141726 polypeptide=Lus10019172 locus=Lus10019172.g ID=Lus10019172.BGIv1.0 annot-version=v1.0 ATGTCTACGACAGCATCCAAGCTCTTCAAGAAGCCAATCCACCACAGAACCAACTCCAACGAGCTCGGCGTGTTCGAAGCATCCAAGTACTTCTCAGCCT ACAATGAGGACCACCCATCTCACCTCACCTCTGCCAAAACCAGAGTACTTCCCTCTAGAGTATCCTCAGGTTCTGCTGGCAGAATGAGCCTAGACCTCCC TACAAGCAGCACCGGAATCGAACCGTTCGACCATCATCACACGATGATCCGAAGCCAAATCCTGAAGGCCGAAAAGGGTCATATTGGTAACAACAGTTCT AGCAATAGTGCTAAACAACACAAGCAGCCAAGCTCTCCGGGAGGGAGAGTGGCAAGCTTCCTGAACACCCTGTTCCACCAGGCGTCCAAGAAGAATAAGA AGAAGAAAGCAAAAGCCAACGAGGAAGATCACGAGAGCCCCGGAGGATCAGGGATGATGAGGAGGAAGAGGAGGAGCAGCATTAGCCATTTCACAAGGTC AATTACTGATACAAGGTCATGGTACTCTTCCAACCATGTACCGGTACTAGTACCGGCATCAAGTACTAGTACTATTGCTTGCACTCCTACCAAGAGTGGA TACAAGAACTTGAGGAGCCTTATTGCTGCTTCGGATCAGAATCAGAAGCTTGGTGGTGTGGAAAAGGGTAGTTGTTGTTGTAAAGATTCATGGTTGGATG AGAAAAGTGTCAATCCTGATGGGATCAGGATTGGAGATTGTGGTGGTGGTGGTAATGGCGAGGATGGTTGTGAGAGTGATTCAAGCTCTGATTTGTTTGA GCTGCAGATTTTTGATTTGGATGCATATTCCAATGGCTTGCCTGTTTATGAAACTACAGATGTGGGTAGCATTGCAAGAGGAGTTGGAGGATCGAAATCG ATTTCGAGTAGTTGCGGCACCATTTGA
AA sequence Show only first row Show all	>Lus10019172 pacid=23141726 polypeptide=Lus10019172 locus=Lus10019172.g ID=Lus10019172.BGIv1.0 annot-version=v1.0 MSTTASKLFKKPIHHRTNSNELGVFEASKYFSAYNEDHPSHLTSAKTRVLPSRVSSGSAGRMSLDLPTSSTGIEPFDHHHTMIRSQILKAEKGHIGNNSS SNSAKQHKQPSSPGGRVASFLNTLFHQASKKNKKKKAKANEEDHESPGGSGMMRRKRRSSISHFTRSITDTRSWYSSNHVPVLVPASSTSTIACTPTKSG YKNLRSLIAASDQNQKLGGVEKGSCCCKDSWLDEKSVNPDGIRIGDCGGGGNGEDGCESDSSSDLFELQIFDLDAYSNGLPVYETTDVGSIARGVGGSKS ISSSCGTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69160			unknown protein		Lus10019172 [exp]	0	1
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	1.4	0.8981
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	2.0	0.8788
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	5.0	0.8481
AT2G40820			unknown protein		Lus10038998 [exp]	5.2	0.8728
AT3G59680			unknown protein		Lus10025594 [exp]	6.3	0.8200
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	6.6	0.8176
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	7.0	0.8466
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	7.3	0.8267
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	7.7	0.8527
AT4G23720			Protein of unknown function (D...		Lus10017546 [exp]	8.6	0.7832

Compare expression of checked genes

Lus10019172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.