Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G03720 184 / 3e-59 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G17390 162 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 155 / 1e-46 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G44760 110 / 7e-30 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G13450 80 / 4e-18 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G48960 60 / 8e-11 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G11360 49 / 6e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT2G21620 48 / 7e-07 RD2 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G68300 48 / 8e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036814 [exp] 181 / 5e-59 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10034661 [exp] 171 / 4e-53 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10007982 [exp] 163 / 9e-50 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 106 / 1e-28 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018190 [exp] 100 / 3e-26 AT1G44760 197 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 99 / 1e-25 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10042701 [exp] 99 / 2e-25 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10014459 [exp] 81 / 1e-18 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 59 / 3e-11 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140200 [exp] 277 / 7e-95 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 268 / 4e-91 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 267 / 7e-91 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 201 / 6e-65 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 120 / 1e-33 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G177100 [exp] 114 / 3e-31 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G064800 [exp] 89 / 1e-21 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.012G059100 [exp] 51 / 1e-07 AT1G48960 175 / 3e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G123200 [exp] 50 / 2e-07 AT1G68300 173 / 5e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.011G039800 [exp] 50 / 3e-07 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10019173 pacid=23141769 polypeptide=Lus10019173 locus=Lus10019173.g ID=Lus10019173.BGIv1.0 annot-version=v1.0 ATGGGTGCAAAGACAGCAGCAGCAGGGGGGTTCTGCCTCAACCGCATCCGCCCACACGTCAGAGTAGTCCGGTCCCCGCAGCAACCTGACCGGCCGAAAC TAGATGATCATGACGGCGGAGGTAAAACTACGCCGACTGAGGCGGTGGCGATCGGAGGAGGAGGAAGGAAGGTGATGATAGTGGTGGATTCGAGCGCGGA GGCTAAGGTTGCTCTGCAGTGGGCGCTTTCCCATACTGTTCAAGTGCAGGACACTCTGCTTCTTCTCCATGTTGCCAAGCCATCTAACAACCATGGCCAC CAAGGGTTGATGAAAGGAAGAGGTTCAAGAGGTTATGAGCTGGCCAACTCTCTAAAGAAAATGAGCCAGATGAAGAGGCCAGAGGTGGAGATAGAGACAG TAATAGTGGAAGGGAAGGAGAAAGGTCCAACAATAGTTGAAGAAGCAAAGAAGCAAGGCGTAGCTCTGCTGGTACTTGGCCAGAGGAAGAGATCTTCGAT GACGTGGCGGCTGATCATGATGTGGGCCAGTAGTAAAGTCAATGCAGCCGGCGGCGGCGGGGTGGTGGAGTATTGTATCCAGAATGCAGAGTGCATGGCG ATCGCCGTCCGGCGGAAGAGCAAGAAACATGGCGGCTACTTGATCACCACTAAACGCCATAAGGATTTCTGGCTCTTAGCCTAG
AA sequence Show only first row Show all	>Lus10019173 pacid=23141769 polypeptide=Lus10019173 locus=Lus10019173.g ID=Lus10019173.BGIv1.0 annot-version=v1.0 MGAKTAAAGGFCLNRIRPHVRVVRSPQQPDRPKLDDHDGGGKTTPTEAVAIGGGGRKVMIVVDSSAEAKVALQWALSHTVQVQDTLLLLHVAKPSNNHGH QGLMKGRGSRGYELANSLKKMSQMKRPEVEIETVIVEGKEKGPTIVEEAKKQGVALLVLGQRKRSSMTWRLIMMWASSKVNAAGGGGVVEYCIQNAECMA IAVRRKSKKHGGYLITTKRHKDFWLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69080			Adenine nucleotide alpha hydro...		Lus10019173 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	8.7	0.7523
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	10.1	0.7319
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	13.4	0.6914
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	20.4	0.6348
AT2G40820			unknown protein		Lus10027293 [exp]	23.7	0.7172
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	24.2	0.6719
AT2G40820			unknown protein		Lus10038998 [exp]	24.8	0.7226
AT5G62550			unknown protein		Lus10024245 [exp]	26.4	0.7044
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	27.5	0.6710
AT1G69160			unknown protein		Lus10019172 [exp]	32.0	0.7047

Compare expression of checked genes

Lus10019173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.