Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69070 555 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036815 [exp] 1333 / 0 AT1G69070 841 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140100 [exp] 855 / 0 AT1G69070 820 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04147 [flax] [poplar] Nop14 Nop14-like family
Representative CDS sequence Show only first row Show all	>Lus10019174 pacid=23141819 polypeptide=Lus10019174 locus=Lus10019174.g ID=Lus10019174.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGACTCAGAACAAAGCTCACAAGAACGGTAGTGAGAACAAGAACAAGAAGAAAAAGAAGAGTAAACGCACTGGTACAGCTGTAGTAGCAA TGAAGAAGCAGGCTAGCGTGGCCGATAACCCATTTGAGACGATTTGGTCCCGCCGCAAGTTCGACGTCATCGGCAAGAAGCGCAAGGGCGAAGAGCGGAG GGTCGGGTCTGCCCGTTCCAAGGCGATCGAGAAGCGGAAGAACACGCTGCTTGTTGATTACCAGCGGAGCTCCAAGTCGTCTGTGTTCGTCGACAACCGG ATCGGGGAAGGGAATGCTGAGCTCGACGAGTTTGATAAGGCTATTAAGCGGTCGCAGAAGGAGCATAAGATGAAATTGGGGAAGAGGAATAAGTTCAACT TGTCTGATGGAGAGGAGGAAGATGATGAGTCCGGGAGCCCGGCACTTGGTTCGTTTGGGGGAAGAGATGATTTCGAGGATGAAATGCCGTTTGATGATGA GGACGATGGAGAACAAGATGGATGGAGAAAGAAGTCTGGCATCTTAAGGAACATTGATTCTTCTGGCATGGAAGGGGACGGTAATGGTGAATTACAAGAA AATATCCATAAATCCAAGAAGGAGGTAATGCAGGAGATCATAATGAAGAGCAAACATTTTAAGGCGGAAAAGGCGAAAGAAAAGGAGGAAAATGAGAAGC TTATGGAAGAATTGGATCAAAAGTTCACATCTTTAGAGCAGTCAAAGGCCATATCTTCTTTGATTGAGCCTACCGAGATGGATGTGGTAAAACCTGCTGT GATATTGAACCTTAACAAGACAGAAGTTACAAATGATAAGTTGCCAACTGCTAAGAGACTGGAAACACGTAGTCAGGAACAACCTGATTCTTACGACAAA CTGTTCTCAGAAATGGTGTTTGATATCCGAGCACGCCCCTCAGACAGGACTAAGACACCAGAAGAGATTGCAGAGGCCGAGAGAGAACGACTTGAGCGAT TAGAGGAGGAGCGGCAAAAACGAATGGTTGAAGCTAGAGATTCTAGTGATGAAGACGACAGTGATACTGACAGGCCCTTAAACAAGAGGCACCACTCAGT ATCTGGGGATGACCTTGGCGATTCCTTTTCTGTTCCAGAACCTGGAACTAGAAAGGGTTGGGTTGATGAGATTCTTGAACGTGAGGAAGCTGAAGAATCT GGGGATGAGGAGAGTGATGCTTCAGAGGGCTCAGAGAGTGGTGAAGGCGAGGATGAAGGATCAGAGGAAGAAAGTGAGGAGGAAGATATAGCACATGGCA AGGTCCAGTCTCTAAAGGACTGGGAGCAAAGTGATGATGAGAATGTTCATACAGATTTGGAAGATGACGATGATGATGAGAAGGATGTAACTGTAACGAG AGACCAGAAAAGGTCCAAAAAAAATGTCACAGCTGAAATTAGGAAAGCGGATAAAGAATCTCAAGATGCTAAGAAAAAGAAAGCGGCCAGTGATCGGCAG TCAATGCTATCAGACCTTCCGTTCTTAATTGAAGCCCCAAAGACCATGGAAGAACTGTCCGCCTTAGTAGATACTCGTTCTAATGCTGACATTATTGTCA TCATTAATCGAATTCGGGCAAGCAATGCGATAAAGCTCGCCGCAGAAAACAGAAAAAAGATGCAGGTTTTTTATGGATTACTCCTGCAGTACTTTGCTGT TTTAGCTAATAAAAAGCCCTTAAATTTCGAGTTGCTGAATTTGCTGGTCAAGCCCCTTATGGAGTTGAGCGTTGAGATTCCATACTTCTCAGCGATCTGT GCTCGGCAACGTATTTTGAAGACTCGATCACAGTTTTGCGAGTCAATGAAGAGTCAGGAATCGAGCTGTTGGCCCTCTTTCAAAACACTGTCTCTTTTGA GGTTGTGGTCTATGATTTTCCCATGCTCGGACTTCCGCCATGTCGTGATGACTCCGGCCATGCTGCTGATTTGCGAATATCTTATGCGTGCCCCTATCTC TTCTGGTCGTGATATTGCTGTCGGTTCTTTCTTATGTTCCATGGTTCTCTCTGTCACTAGAGAGACGAAGAAGTTCTGCCCAGAAGCCTTAATTTTTCTA CGGACCTTGCTTATGGCAGCCAGTCAAAGATTACCAGCTGCTCACGAAGGATCTCAGTTTCATCCCATCAGAGAGTTGAAGGAACTCCAGCCTCTGCTAT CTATACGCGGTGAGATGCAGGAGATTAGTCCTTTGAATTTCCTGGCAGTGATGGATATGCCTGAAGACGACTCATTTTTCAGCTCAGATACTTTCAGGGC AAGCTTGCTGGTGACTTTAACAGAAAATTTAAGGGGATTCATCGAAATGTATGGAAATCTAAGTTCCTTCACAGAAATCTTCATCCCTATTTCGACACTA TTACTCGGATTGGCAGAAGAAGCAAATATTCCACCAGCATTGCAAGACAAATTCAGAGACGTTGGGCTCCTCATCAAGCAGAAAGCCGATGAGCATCATA TGCTTCGACAGCCATTACAGATGCGGAAGCAGAAGCCAGTTCCAATGAAACAATACACTCCAAAATTCGAAGAGACGTTCGTCAAGGGTAGAGATTATGA CCCGGATCGCGATCGTGCTGAAAGGAAGAAGTTGAAGAAACTCCTGAAAGACGAAATCAATGGTGCAGTTCGCGAACTCCGCAAGGATAACTACTTCATG CTTGGGGTGAAGGAACAGGAAAGAGCCGTTAGGGAGGAAGAGAAGAAGGAGGCTCACGGTCGAGCCAGAGCTTTCCTTCAAGAACAGGAGCACAATTATA AATCCGGCCAACTAGGGAAAGGGAAAGGCAAGAAGCGCAGGAGATGA
AA sequence Show only first row Show all	>Lus10019174 pacid=23141819 polypeptide=Lus10019174 locus=Lus10019174.g ID=Lus10019174.BGIv1.0 annot-version=v1.0 MAAKTQNKAHKNGSENKNKKKKKSKRTGTAVVAMKKQASVADNPFETIWSRRKFDVIGKKRKGEERRVGSARSKAIEKRKNTLLVDYQRSSKSSVFVDNR IGEGNAELDEFDKAIKRSQKEHKMKLGKRNKFNLSDGEEEDDESGSPALGSFGGRDDFEDEMPFDDEDDGEQDGWRKKSGILRNIDSSGMEGDGNGELQE NIHKSKKEVMQEIIMKSKHFKAEKAKEKEENEKLMEELDQKFTSLEQSKAISSLIEPTEMDVVKPAVILNLNKTEVTNDKLPTAKRLETRSQEQPDSYDK LFSEMVFDIRARPSDRTKTPEEIAEAERERLERLEEERQKRMVEARDSSDEDDSDTDRPLNKRHHSVSGDDLGDSFSVPEPGTRKGWVDEILEREEAEES GDEESDASEGSESGEGEDEGSEEESEEEDIAHGKVQSLKDWEQSDDENVHTDLEDDDDDEKDVTVTRDQKRSKKNVTAEIRKADKESQDAKKKKAASDRQ SMLSDLPFLIEAPKTMEELSALVDTRSNADIIVIINRIRASNAIKLAAENRKKMQVFYGLLLQYFAVLANKKPLNFELLNLLVKPLMELSVEIPYFSAIC ARQRILKTRSQFCESMKSQESSCWPSFKTLSLLRLWSMIFPCSDFRHVVMTPAMLLICEYLMRAPISSGRDIAVGSFLCSMVLSVTRETKKFCPEALIFL RTLLMAASQRLPAAHEGSQFHPIRELKELQPLLSIRGEMQEISPLNFLAVMDMPEDDSFFSSDTFRASLLVTLTENLRGFIEMYGNLSSFTEIFIPISTL LLGLAEEANIPPALQDKFRDVGLLIKQKADEHHMLRQPLQMRKQKPVPMKQYTPKFEETFVKGRDYDPDRDRAERKKLKKLLKDEINGAVRELRKDNYFM LGVKEQERAVREEEKKEAHGRARAFLQEQEHNYKSGQLGKGKGKKRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69070			unknown protein		Lus10019174 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	1.0	0.9709
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	2.4	0.9619
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	2.4	0.9612
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	2.8	0.9552
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	3.5	0.9569
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	4.5	0.9592
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	4.7	0.9455
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	4.9	0.9525
AT1G63810			unknown protein		Lus10026014 [exp]	5.0	0.9579
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	5.5	0.9544

Compare expression of checked genes

Lus10019174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.