Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14620 342 / 5e-112 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14680 323 / 1e-104 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT2G46960 318 / 6e-103 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14630 318 / 7e-103 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 317 / 1e-102 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14690 316 / 6e-102 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G26710 314 / 4e-101 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46950 310 / 9e-99 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 305 / 7e-98 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14660 303 / 4e-97 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036816 [exp] 907 / 0 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10019175 [exp] 748 / 0 AT3G14620 318 / 1e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036817 [exp] 612 / 0 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 602 / 0 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 601 / 0 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019184 [exp] 526 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10005788 [exp] 534 / 4e-180 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10026085 [exp] 509 / 2e-177 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 508 / 3e-175 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 535 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 478 / 3e-165 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 476 / 2e-164 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 472 / 7e-163 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 471 / 3e-162 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 466 / 2e-160 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 373 / 8e-125 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 330 / 3e-107 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G101401 [exp] 327 / 4e-106 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.006G154500 [exp] 327 / 6e-106 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019176 pacid=23141779 polypeptide=Lus10019176 locus=Lus10019176.g ID=Lus10019176.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGCCACTAATATTAATCTCTGTAGTGGTCTTGTATATTGTTTATGCCCTCGTGAATTTCCTTCACAATGTGGTATGGCAACCCTTCAAAA CGCAGCGTATCCTCACCACCCAAGGGATCAAAGGTCCCGGTTACCGGTTCGTGTTCGGGAATGCCAAGCAACTCGTACAGTTGAGGAACGAGGCGCTTTC GAAGCCGATGGCCTCCCTGTCTCACGATATATCTCGTAGGTGCATGCCCAACATCACCAACTGGGCCGAGCAGTATGGAAAACCGTTTGCATTCTGGATC GGGCCACGAGCGCAACTGGTATTGACGAAGCCGGAAGATATCAAAGAGGTTATGAGCACAAAGTACAAGATCTTTCCGAAAGCAGAGTTGTACTCTGTTT ACCTTAAGAAGATATTTGGGGAGGGGATAGTAATGAGCGAAGATGAAAAATGGAGCAAGGCTAAGAACTTGGCCAACTTTGCTTTCCATGGAAATAGTCT CAAAGGTATGATACCAGACATGGTTGGTAGTGTGGAAATGATGCTTGACAGATGGAAGAGCATCAAAGAAGGGGAAGAGATCGAAGTTCATGGAGAATTT AGAATACTGACTTCTGAAATTATCTCGAGAACTGCTTTTGGAAGTAGCTTTCAAGAAGGAATTGAGATATTTCAAATGATTCATAAGATGATGGAACTTG CTGAGATCAATATGTACGCTATCAGATTACCATTCATCAGTGACATGTTCAAAACCGCAGACGAGAAGGAAGTGGAGTTGCTAGAGAAAGGAACTGAAGA CTGCATAATGAAAATTATTTCAAAGAGAGAAGAGATGATGAAAAGTGGAGATGTTGATGGGTATGGCAACGATTTTGTCGGGTTAATGATAAAGGCTTGT CACGAAGACGACGAAGCCAAGAAGATATCTACTAAGCAGTTGATTGCCGACTGTAGAATACTATACACGGCAGGACAAGAGACCGGCAACTCCATGCTTT CTTGGATCATGCTGCTTCTGTCGGTCCATCAGGACTGGCAGGAAACAGCAAGAGCAGAGGTTATTAAAATTTTCGGTCATAATCAAGCTCCTCATGTCGA TGGGATCGCAAGGTTGAAGAATCTGGGGATGATTGTTCTTGAAGCCCTAAGACTGTATTCACCTGTATACACAACGTTCATTCGAGACGTTATTGATGAG GAGGACAACGCAATGGTGGGGAAGCTGACCCGACTTGGCCAAGTCCAGTTACACATCCCAATCTTAGTGATTCACCATGATCCTAAGATATGGGGAGAAG ATGTGCATCTTTTCAACCCTAAGAGGTTCAAGGAGGGGATTTCCAAGGCTACCAACAACAATCCGGCTGCGTTTTTGCCGTTCGGGTTAGGACCTCACAA GTGTGTTGGATTCAACTTTATTCAAGTAGAAGCCAAGGTAACGCTTGCAATGATTCTTCAACGTTATTCGTTCACACTCTCGCCTGGCTATGTTCATGCT CCTTATCCTGGTGTGACGCTTCGCCCCCAAAATGGAGTCCAGATCTTTCTTAATGCCCTCTACTAG
AA sequence Show only first row Show all	>Lus10019176 pacid=23141779 polypeptide=Lus10019176 locus=Lus10019176.g ID=Lus10019176.BGIv1.0 annot-version=v1.0 MSYLPLILISVVVLYIVYALVNFLHNVVWQPFKTQRILTTQGIKGPGYRFVFGNAKQLVQLRNEALSKPMASLSHDISRRCMPNITNWAEQYGKPFAFWI GPRAQLVLTKPEDIKEVMSTKYKIFPKAELYSVYLKKIFGEGIVMSEDEKWSKAKNLANFAFHGNSLKGMIPDMVGSVEMMLDRWKSIKEGEEIEVHGEF RILTSEIISRTAFGSSFQEGIEIFQMIHKMMELAEINMYAIRLPFISDMFKTADEKEVELLEKGTEDCIMKIISKREEMMKSGDVDGYGNDFVGLMIKAC HEDDEAKKISTKQLIADCRILYTAGQETGNSMLSWIMLLLSVHQDWQETARAEVIKIFGHNQAPHVDGIARLKNLGMIVLEALRLYSPVYTTFIRDVIDE EDNAMVGKLTRLGQVQLHIPILVIHHDPKIWGEDVHLFNPKRFKEGISKATNNNPAAFLPFGLGPHKCVGFNFIQVEAKVTLAMILQRYSFTLSPGYVHA PYPGVTLRPQNGVQIFLNALY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10019176 [exp]	0	1

Compare expression of checked genes

Lus10019176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.