Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 253 / 9e-80 HXXXD-type acyl-transferase family protein (.1) AT1G24420 236 / 3e-73 HXXXD-type acyl-transferase family protein (.1) AT3G30280 228 / 4e-70 HXXXD-type acyl-transferase family protein (.1) AT4G15390 228 / 6e-70 HXXXD-type acyl-transferase family protein (.1) AT5G47950 212 / 4e-64 HXXXD-type acyl-transferase family protein (.1) AT1G24430 207 / 4e-62 HXXXD-type acyl-transferase family protein (.1) AT5G47980 205 / 3e-61 HXXXD-type acyl-transferase family protein (.1) AT5G23970 195 / 1e-57 HXXXD-type acyl-transferase family protein (.1) AT4G15400 176 / 3e-50 HXXXD-type acyl-transferase family protein (.1) AT2G19070 107 / 2e-25 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036819 [exp] 796 / 0 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 244 / 3e-76 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 236 / 7e-73 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 217 / 2e-65 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 218 / 4e-64 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036927 [exp] 205 / 5e-63 AT3G26040 138 / 9e-38 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 185 / 2e-53 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 181 / 6e-52 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 176 / 7e-50 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054100 [exp] 249 / 3e-78 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 246 / 4e-77 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 245 / 2e-76 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 243 / 6e-76 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 238 / 7e-74 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 235 / 6e-73 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 234 / 2e-72 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 233 / 1e-71 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 227 / 1e-69 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 213 / 3e-64 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10019183 pacid=23141709 polypeptide=Lus10019183 locus=Lus10019183.g ID=Lus10019183.BGIv1.0 annot-version=v1.0 ATGAAGCTTCCAATAAGAAAACCAGAGGTTTACTCAAGAGAGATGATCAAACCATCTTCTCAAACTCCAACCCACAACAAAACGTACAACCTTTCCTTTT TCGACCAGTTGACTCCTCCGATCTACATCCCGCTCCTCTTCTTTTACCATTCTGATCAATCATTCCATCCCAACAATTTGATTTTGCTGAAAAGATCCCT CTCTTCAGCACTAACCAAGTACTACCCGCTAGCCGGAACGATATTCATGGATTCGCTAACAGTCGACTGCAACGACAGAGGCGTCCTCTTCCTACAAGCG CGGATGATGAACTCAAAACTGTCCGAATTTCTTGAGGCTCCGACGGATGACGCCATGAAGCCACTGTTCCCTGATGATCTTTGCTACAAGGACACAACCT TGAGCAGCCCGTTGACCGTTCAGGTCACGGAGTTTGACTGTGGAGGTTTGGCTTTAGCCATATGTTGGTCCCATAAGATCTTAGATATGTCGAGTATTTG TTCGTTTGTCAACTACTGGGCTGCCTTGGCTGCTGGTCCGATCGAAATTCTGGATACGCCACTTCAATTTATTTCGGAAACTTTGTACCCTCCGATTAAT TCGCAGGTAACAATGACTATTTATCCTCAACCAGTGAAATGCATCAACAAGAGACTTGTCTTCTCAGGGACAACCATTTCCAAACTCAAATCCATGGTCA AAGACAAAGTCAATAACCCAACAAGGGTAGAACTAGTTCTAGCACTTCTATATGGCTCTGCCGTTTCGGCAGCTAGAGTCTGTTCGGTTCGAGCTTTAAG GCCAACAATTTTAAGCCAAGCAGTAAACATGCGCGGCAGGTTAACCTCACAAACTCCATCCCCAATTTCGATAGGGAACTTTTCTTCAACCTTCGTCATG CCTACTTCTCTAGATTTCGACCCGGACCACCTGCTCCCGCTCGTGGAGGCGATCAGGAAGATGAAAACCGAGTATTTTGAGTCGTGCAAGGTCGAATTCA GAAGTGCGGAAGAGTTTTGCAAGTTTATAGTGGACACCACTAATGCGTTTAGAGGAACCGGCAGTGGTGAAGGAATGGATGTGTACATTTCGACCAGCTG GTGTGGTTACCCACTGTACGATTCGGATTTTGGGTTTGGGAAACCAGTTTGGATGACGACAGCTGGTTCGGGTATGAAGGACGTGATCATTTTGATGGAC ACGAGGGATGGGGATGGGGTCGAGGCACTTGTTTGTTTGGAAGAAGAAGAGATGGCTGCATTTGAGAGGGATCAGAGGGTTCTTGATTTCGCTGAAATCA ACCCGAACCCATTATTCTGA
AA sequence Show only first row Show all	>Lus10019183 pacid=23141709 polypeptide=Lus10019183 locus=Lus10019183.g ID=Lus10019183.BGIv1.0 annot-version=v1.0 MKLPIRKPEVYSREMIKPSSQTPTHNKTYNLSFFDQLTPPIYIPLLFFYHSDQSFHPNNLILLKRSLSSALTKYYPLAGTIFMDSLTVDCNDRGVLFLQA RMMNSKLSEFLEAPTDDAMKPLFPDDLCYKDTTLSSPLTVQVTEFDCGGLALAICWSHKILDMSSICSFVNYWAALAAGPIEILDTPLQFISETLYPPIN SQVTMTIYPQPVKCINKRLVFSGTTISKLKSMVKDKVNNPTRVELVLALLYGSAVSAARVCSVRALRPTILSQAVNMRGRLTSQTPSPISIGNFSSTFVM PTSLDFDPDHLLPLVEAIRKMKTEYFESCKVEFRSAEEFCKFIVDTTNAFRGTGSGEGMDVYISTSWCGYPLYDSDFGFGKPVWMTTAGSGMKDVIILMD TRDGDGVEALVCLEEEEMAAFERDQRVLDFAEINPNPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	1.4	0.9745
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	1.7	0.9779
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	2.2	0.9566
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	3.5	0.9684
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	5.7	0.9416
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	6.0	0.9598
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	6.5	0.9549
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	6.9	0.9305
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	7.2	0.9455
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	7.5	0.9277

Compare expression of checked genes

Lus10019183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.