Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44540 440 / 1e-150 FAR4 fatty acid reductase 4 (.1.2) AT5G22500 429 / 2e-146 FAR1 fatty acid reductase 1 (.1) AT3G44550 429 / 3e-146 FAR5 fatty acid reductase 5 (.1) AT4G33790 413 / 4e-140 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G44560 402 / 7e-136 FAR8 fatty acid reductase 8 (.1) AT3G11980 296 / 3e-93 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22420 261 / 4e-82 FAR7 fatty acid reductase 7 (.1) AT3G56700 241 / 3e-73 AtFAR6, FAR6 fatty acid reductase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036824 [exp] 926 / 0 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10020584 [exp] 421 / 3e-143 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 410 / 6e-139 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 303 / 3e-95 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10029336 [exp] 302 / 3e-95 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 297 / 8e-94 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 250 / 5e-81 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2) Lus10000851 [exp] 233 / 3e-69 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036822 [exp] 122 / 2e-29 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G185100 [exp] 509 / 6e-178 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 493 / 2e-171 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 455 / 2e-156 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.004G185000 [exp] 448 / 9e-154 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 428 / 4e-146 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G062200 [exp] 317 / 2e-101 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 291 / 3e-92 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 278 / 3e-86 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145100 [exp] 58 / 1e-10 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10019187 pacid=23141736 polypeptide=Lus10019187 locus=Lus10019187.g ID=Lus10019187.BGIv1.0 annot-version=v1.0 ATGATGACTCCGTGGCCAGCATCGCTACTCGAGAATAAGACCATTTTCGTTACTGGTGCATCCGGCTTTCTGGGCAAGCTGTTTGTGGAGGAGATACTGA GGGTCCAGCCTGATGTGAAGAAGCTCTACCTTCTTTTACGTGCTCCGGATTCACACTCTGCTACGAACAAACTTCATCATGAGGTGACTGAGAAGGAAGT GTTCACGGTTTTGAAAGAACAATTAGGAACAGAGTTTCCTGGGTTCATATCGGAGAAAGTGGTTGCGGTGGCCGGAGACGTCTCCTTTGAGGATTTGGGG ATACAAGATGTCCATCTCAAGCAACAAATTTGGACGGAAACAGACGTCTTTCTGCATTCTGCTGCCACCACTGCCTTCGACGAGAGGTACGATGTAGCGC TGGGGACAAACACCATTGGAGCATCAAATGTGTTGAGGTTCTCAAAGAAATGTCTCAAAATCCAGTTGCTTATCCATGTCTCCACAGCCTATGTTTGTCC TGAAAAGAAAGGGATTGTGTTAGAGAAGCCATACTCCCTGGCGAAACTAGCTGGCAAAGTCGATCATGTCGGGACGACGACGACTGAGCAGTTGATCAAT CACGAGTGTGAGCTAGTCAAGCAAAAGTTGCATCAACTCCGGTCCAGGAACCTCCCTGAAAATGCAATTGCTTCTGCCATGCAAAATCTTGGACTTGAAA GGACAAAACATTATGGATGGCCCAACACTTACACATTAACAAAGGCAATGGGAGAAATGATAATGATGGATTTGAAAGGGGACCTCCCAGTTGTGATTAT GCGTCCCACCATGATAACAAGCACTCTTCAACACCCCTTTCCCGGCTGGATCGAAGGCGCTAGAACCATTGATGGAGTAATAGTGAACTACGCTAAAGGA AGAGTTAACATACTTGTGCATGGACCCCAAGTCATTCTTGATTTGAAAGATTGGGGATCGATGCAGATTCCGGCAGACATGGTTGTGAATGCAATCATTG TAGCTATGGGGTTGGGAGTTGCTGCAAAGATGGAGAAGAAGAAGAAGGCTTTGGAGCCAATTTACCACTTGGGTTCGTCGAGAAATAACCCCATAAAAGT GTCGCATCTTCATCGATTCAGCGTAGCTTTCTTTAACGAGAATCCATGGATAGATAGCCGCAATGGAAAGGTTGTTAGGCCTAAGAAGATTGCCACTTTC ACCTCCATTGCTCATTTCCGTTTCCACATCGCCATTCATTTCCGACTCCCTTTGAAGGTTCTGGGCATATGGAACTCAATCTGTTGCAACAAATACCAAG CCAGTTACATGGATTCCCGTCGCAAGTTCAAGTTCGGAATGCGATTGATGGGATATTACTTGCACTTCTTACTTTCCGAGGCAATTTATGATGACACAAA CTTGAAGAAGCTGAGGAAACAAGCTACTGAAATGGATGATGAAAAAAGAGAGCAGTTGAACTTGGATACAGGGAGCATTTGTTGGGAATACTACTTCATG AATATTCACATTCCTGGTCTTGTCAAATTTGTGATGAAGAAATCGAACTCTATGAAATAA
AA sequence Show only first row Show all	>Lus10019187 pacid=23141736 polypeptide=Lus10019187 locus=Lus10019187.g ID=Lus10019187.BGIv1.0 annot-version=v1.0 MMTPWPASLLENKTIFVTGASGFLGKLFVEEILRVQPDVKKLYLLLRAPDSHSATNKLHHEVTEKEVFTVLKEQLGTEFPGFISEKVVAVAGDVSFEDLG IQDVHLKQQIWTETDVFLHSAATTAFDERYDVALGTNTIGASNVLRFSKKCLKIQLLIHVSTAYVCPEKKGIVLEKPYSLAKLAGKVDHVGTTTTEQLIN HECELVKQKLHQLRSRNLPENAIASAMQNLGLERTKHYGWPNTYTLTKAMGEMIMMDLKGDLPVVIMRPTMITSTLQHPFPGWIEGARTIDGVIVNYAKG RVNILVHGPQVILDLKDWGSMQIPADMVVNAIIVAMGLGVAAKMEKKKKALEPIYHLGSSRNNPIKVSHLHRFSVAFFNENPWIDSRNGKVVRPKKIATF TSIAHFRFHIAIHFRLPLKVLGIWNSICCNKYQASYMDSRRKFKFGMRLMGYYLHFLLSEAIYDDTNLKKLRKQATEMDDEKREQLNLDTGSICWEYYFM NIHIPGLVKFVMKKSNSMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	0	1
					Lus10039439 [exp]	2.0	0.9999
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	9.4	0.9999
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	9.7	0.9992
					Lus10010593 [exp]	13.4	0.9997
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	14.3	0.9980
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	15.7	0.9941
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	16.2	0.9999
					Lus10004351 [exp]	18.8	0.9999
AT1G72460			Leucine-rich repeat protein ki...		Lus10015678 [exp]	19.7	0.9920
					Lus10014857 [exp]	21.0	0.9999

Compare expression of checked genes

Lus10019187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.