Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14630 157 / 1e-40 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14680 154 / 9e-40 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14610 154 / 1e-39 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14620 153 / 3e-39 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT1G02910 150 / 8e-39 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) AT3G14690 151 / 1e-38 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G26710 149 / 5e-38 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT1G75130 147 / 4e-37 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14660 145 / 9e-37 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14640 145 / 2e-36 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036822 [exp] 317 / 2e-97 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10004633 [exp] 259 / 6e-77 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026681 [exp] 256 / 1e-74 AT3G14620 322 / 4e-103 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Lus10036823 [exp] 201 / 1e-58 AT3G14610 227 / 2e-71 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) Lus10036820 [exp] 201 / 1e-55 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036942 [exp] 194 / 3e-51 AT2G26710 375 / 2e-119 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010280 [exp] 185 / 1e-50 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10026085 [exp] 186 / 2e-50 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 187 / 4e-50 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139300 [exp] 216 / 2e-61 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 205 / 3e-57 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 204 / 5e-57 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 194 / 2e-53 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 191 / 2e-52 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 186 / 1e-50 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 171 / 2e-45 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099200 [exp] 165 / 7e-45 AT3G14660 466 / 3e-163 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) Potri.011G099800 [exp] 168 / 2e-44 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 168 / 2e-44 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019188 pacid=23141802 polypeptide=Lus10019188 locus=Lus10019188.g ID=Lus10019188.BGIv1.0 annot-version=v1.0 ATGAGGGAGAATGATGATAATGCAGTTGTGGTGGATGTTGAAATCGATGGTCTTGATAGTGTGGTCACGGTTGATGCTCCGGAATCTCTTCGCGCGAAAT TGAGGTATACTTGTGACGTTAGAGTAGGGAAGAAGGTTTCGTTTCAGGTCTTGTTAAGAATTGATGATAATGATGGTGCTGGTGATGAAGTGAAAGAGGA AGGCGATCAGAATTTGGGGGAAGATGATGATGATGATGATGATGACAGTTCATACGGTGCTAGTGGATTCAACAAGAAAGCCAAGTCCAGTGAACATGAT TCTGGTAAGAAAGATGAATGTGGAGACAATCCTTCTGCTGGTTGTAAAGGGTTCAATGAAGAATCTGACAATTCTTGTCCCGAGAACCGGTTTGGTCAGG ATGATGGGGAGGTGCCTTGCAACGAGACTAAGGCTCCGAAATCTCGAAACTCAGGTGCTACTGAGTTCACGGAGAAGGAACAGAATGGAGCATCTTCTGA CAATGTAGATGATGAAAACTGGTCTGCAAAACCCGAACAGAAGGATGGCCAGGAGAAATTTTGTCCTGGAGAGAATCGAAAGGAAGCTGATGATTTTGTT AAACGGGAGACTTCTGCTGAAGATACCGATGAGTCTGTTCGTGATGAATGCCGACCTTCTGAATGTGATAAAGACAGTACCTTTAAGTATGAGGAAAGCC ACGATGAGCCTTTCTCACCGCCCGACTGGGATTATGACTATTATGATCAGTTTGACTGGAGCTGCAGTTTTGATGATGCACAGAACGCTGAGTTTCTATC CGACTTAGACTTTCGTTACTGCAATCAACGTCGTCGCAACAAAGCTGAAGTGGAGGAGGAAGGCGTTGAGAATTTAGGGGAAGATGATGGTACTTCAAGC GAGTTCGACAACAAAGCTAAATCCACGAAGAAAGATGAATGTGGGAATGATGCTTCTGATTGTAAAGATTTCAAAGGTTCTTATGAGAATCTCGACGAAG AGTGTGAAAGAAGTTTTCATGGGAGTCAGTCTGGTCAGGAGGATAGGAACGTTCCTCAGAGTTCATGGTCGGGGAACGGAGATAACGCTAAGGAGGCTGA TGATTGCTTCAAGGAAGAGGCTTTTGTTGAAGATCACAGAAGCTCATTTGATGATAAAAAAGCCTATCAATCTCATGCCACCCATGAAGATGATTGTCAT GTTGTTCAAGATGATATAATGAGTGAGCGAGAAAGAATGAAGGAGACAGACGGATACAAACGTGCAGTCGAAGAAGAGTGGGCCGCAAGGCAGCAGGAAA TACAGAATCAGGCAGAAGAGGCTCGAACATTGCGTAAGAGAAGAAAGCTTGAAATGAGTGAGGCAGAAAAGAAGGCACAAGAGGCAGAGCGAAATCTTAA GAGGAAAAAGGCTGAAGAGTTGCGTGTTACGAATCTTCAGAAGAGGCTGAAAGAGCGAGTACAAGAATTCAAAGATGCAGAGAGGAAGGAGGAGGCAGAT AAAATTGAGAAGGAGAGACACCGGGTTGCAGCGAGGCAGTATATTTCCTGGCTGGAGAGCAAATGCAAAGATTTGCCTTCACTGTTACACACTTTGGGAA TTGGTGGGTCAAAACCTTCGCCTGTCGAGGTACGCAAAGCGTATAAACTAGCTGTGCTGAAGTACCATCCTGATCATTCATCAAAGGCTGGCATTTGGGA GCAGGTTCAGGCTGAGGAAATTTTTAAACTTATTAGGAAGATGAATGAAGACAGAAGATCAGAAATTGAGAAGAAAGGTTTTGGCACATCTCGAAAAGCA GCAGCTGCCCTTCCATCTATTGGGGAAGATTTTGAGAAACGAGCCCAGTCTGTTATCGCAAAATCGAAGTTGAAAGCTGAAATCCGATTCAAGGCCGAGG TTGTATCCCCTGCTGAATGGGAAAGGTGGATAATGGATCAGCAAAAATCTGAAGGCGTTACTCCTGGTGAAGATGTCTACATAATACTGCGGCTGGATGG TCGAGTTCGAAGATCCGGGAAAATAACTGTTGATGATGTGGTCGACGAGTGCAAGTCATTTTATGTCACGGGACACGAGACAGTCACTTGTTCGCTGACA TGGACTGTTCTGCTTCTAGCGATTCACACAGATTGGCAGGACAAGGCACCGGAAGAGGCGCTGGAAATGTTCGGATCAACAAAAAATCCTTGCCTCGATG GTGTTTCGAGATTGAAAACCATGGCAATGATCGTTAATGAATCGTTGAGGCTTTACCCGCCAGTGTTTAATTTGACCAGAGAAGTTGCGAGGGAAACCAA GTTAGGGACGTTCATCCTTCCTGCAAACATGGCATTGAAATTTCTCCTATCCGGTTTTGGACCGAGAACTTGCGTGGGGATGAACTTGGCAGCTGCAGAA ACTAAAACCGCGCTCTCTGTGCTTCTTCAACGCTATCGATTGGCTCTTTCGCCTTCTTATGTCCATGCGCCAGTTCACATGCTCACAATCTGCCCTAAAC ATGGCCTTCAAATCCTCCTCCAGCCACTCTAA
AA sequence Show only first row Show all	>Lus10019188 pacid=23141802 polypeptide=Lus10019188 locus=Lus10019188.g ID=Lus10019188.BGIv1.0 annot-version=v1.0 MRENDDNAVVVDVEIDGLDSVVTVDAPESLRAKLRYTCDVRVGKKVSFQVLLRIDDNDGAGDEVKEEGDQNLGEDDDDDDDDSSYGASGFNKKAKSSEHD SGKKDECGDNPSAGCKGFNEESDNSCPENRFGQDDGEVPCNETKAPKSRNSGATEFTEKEQNGASSDNVDDENWSAKPEQKDGQEKFCPGENRKEADDFV KRETSAEDTDESVRDECRPSECDKDSTFKYEESHDEPFSPPDWDYDYYDQFDWSCSFDDAQNAEFLSDLDFRYCNQRRRNKAEVEEEGVENLGEDDGTSS EFDNKAKSTKKDECGNDASDCKDFKGSYENLDEECERSFHGSQSGQEDRNVPQSSWSGNGDNAKEADDCFKEEAFVEDHRSSFDDKKAYQSHATHEDDCH VVQDDIMSERERMKETDGYKRAVEEEWAARQQEIQNQAEEARTLRKRRKLEMSEAEKKAQEAERNLKRKKAEELRVTNLQKRLKERVQEFKDAERKEEAD KIEKERHRVAARQYISWLESKCKDLPSLLHTLGIGGSKPSPVEVRKAYKLAVLKYHPDHSSKAGIWEQVQAEEIFKLIRKMNEDRRSEIEKKGFGTSRKA AAALPSIGEDFEKRAQSVIAKSKLKAEIRFKAEVVSPAEWERWIMDQQKSEGVTPGEDVYIILRLDGRVRRSGKITVDDVVDECKSFYVTGHETVTCSLT WTVLLLAIHTDWQDKAPEEALEMFGSTKNPCLDGVSRLKTMAMIVNESLRLYPPVFNLTREVARETKLGTFILPANMALKFLLSGFGPRTCVGMNLAAAE TKTALSVLLQRYRLALSPSYVHAPVHMLTICPKHGLQILLQPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	0	1
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	1.4	0.8945
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	1.7	0.9056
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	3.5	0.8795
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	4.4	0.8290
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012483 [exp]	4.5	0.8547
AT3G52230			unknown protein		Lus10038643 [exp]	6.3	0.8637
AT2G17787			unknown protein		Lus10013567 [exp]	6.9	0.8905
					Lus10024538 [exp]	7.3	0.8586
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	8.8	0.8409
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	9.2	0.8786

Compare expression of checked genes

Lus10019188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.