Plant FIBer expression Database

Lus10019189 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69060 197 / 4e-55 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036825
[exp]
889 / 0 AT1G69060 226 / 4e-66 Chaperone DnaJ-domain superfamily protein (.1)
Lus10019188
[exp]
125 / 5e-30 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G109100
[exp]
226 / 2e-65 AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1)
Potri.T155180
[exp]
226 / 2e-65 AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1)
Potri.010G139100
[exp]
226 / 5e-65 AT1G69060 278 / 1e-83 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0392 Chaperone-J PF00226 DnaJ DnaJ domain
Representative CDS sequence
>Lus10019189 pacid=23141799 polypeptide=Lus10019189 locus=Lus10019189.g ID=Lus10019189.BGIv1.0 annot-version=v1.0
ATGAGGGGAGAGGGACTGTCGAGAGATTGTTCGCAGACTGGACCTTCTTCGGGGAAGAGAACGTTACGGCCCAGCAAGATGAAGGGGACTTTTGATAATG
TGATGGTGATTGATGTTGACGACAGTGACGGATATGATGGGGTGTTTATCATTGATGTCCCTAAGAGTTCCAAAAAGGGCGCTGATTTGCGTGATTCTTC
TCTTAAGCAGAATTTTGGTGGACCTTCTCATGTGCTCAGAGAAAGGAATCGAGTTTCGTTCGAGGGGACAATACACATTGATGATGACGAGGAGGAGGAT
GAGGATGACTCTTGTTACGAGTGTGATAGTGATTCGTCCGAAGATGACGACCAGAATTTGGGGGTTAATGACATGCCGAGTACTTCTGCTCCGAGCAATG
TACAGAAGGACTCTACAGTGGATGCTTCTGATGATTGTGAGTTTATTGGGTTTGGAGTATCAGCTCGCAACATCTCTAGATGTAGGGCACAGTACACCGA
GGAATCTTGTTCTAGGAATCGTTATGGCTACTATCGGGACTTGAGTGATTCGTCTGAAAGCGACTCTTCTGATTGTGAAATTTTGGACGGTTCACGCGGA
AACCCTCGGGAGCAGTGGGAAGAAGCTTGTAAGAGGAAGAAAAAATCTCATGCTCGTAAGGATCAGCCTGATGCACAGGATAAGGATGGTTCCTCTAATT
GCGATAAGGATCAGTTGAGTGGACAAGATAGGGATGCTTCCTCTGATCCAGAAACTGAACGATTTCCGAATTCAGGTCCAGCTACAGAATCAACTCAGAA
AGTCGATCAGGGGAGTGTGCCTGGCTGTTCAAATTCAACATCAGCAAATGCTAGTCCTCTTAATAAAGGTGACGATCACAGTTCTGGTCTCGGCAAGTGT
CCAAGTTCTAACCAAGATAACTCTAGGTTTCAGGATCCTTCTTCGTGCAAGGAAGGATTATGGCAAGATTTGGTTAATAGCACATTTATACCTAAAAGTA
AAGAAACCAGGCATCATGGTACCGCCGCTTCTAAAGGTAAAAAGAAACTTGATTTATCTAGGAAGCATCATCAGGCAACTCAGGATAAGCCAGAGACATC
AGGTTCTGGAGAAAGAAAGAGGCCATCGGCTGAACTTATACCTGAATCACACCACTCTGGTGACAATAACCCGGCGAGCTCTTCTTCTCCCGAGGATGCT
TCGCTTTGTGAAGGAAATATAATCAACGAGCGTGAGAAGATGAAGGAGACTGCGGAATACAAGCGTGCCATTGAAGAGGAATGGGAAGCTAGGCAGCAGC
AACTACGAATTCAGGCAGAGGAGGCTCAGAGATTGCGGAAAAGGAAAAAGGCCGAAGCTTTGCGCATCTTGGACATGCAGAGGAGGCAAAAGCAGCGGCT
CGAAGAGGTTAGAGAGATACAGAAGAAGGACGAAGAGAACTTGAACACCAAAGAGAGACTCCGCGTCGAAGTGAGGAAAGAACTCTCCCTGTTGGAAAGC
CGTTCCGTTGACTTGGCCTCGGTGCTTCGCAGTTTGGGAATCAACGTCGGAGGTGGCTTTCGTCCAGCATCACACGAGGTGCATGCAGCTTACAAGCGAG
CGTTGCTGAAGTTCCACCCGGATCGAGCATCGAGGACCGACATTCGTCAGCAGGTTGAGGCTGAGGAGAAGTTTAAGCTTATATCTCGAATGAAGGAGAA
GCTTTTTCCTGCTTCACTATGTTGA
AA sequence
>Lus10019189 pacid=23141799 polypeptide=Lus10019189 locus=Lus10019189.g ID=Lus10019189.BGIv1.0 annot-version=v1.0
MRGEGLSRDCSQTGPSSGKRTLRPSKMKGTFDNVMVIDVDDSDGYDGVFIIDVPKSSKKGADLRDSSLKQNFGGPSHVLRERNRVSFEGTIHIDDDEEED
EDDSCYECDSDSSEDDDQNLGVNDMPSTSAPSNVQKDSTVDASDDCEFIGFGVSARNISRCRAQYTEESCSRNRYGYYRDLSDSSESDSSDCEILDGSRG
NPREQWEEACKRKKKSHARKDQPDAQDKDGSSNCDKDQLSGQDRDASSDPETERFPNSGPATESTQKVDQGSVPGCSNSTSANASPLNKGDDHSSGLGKC
PSSNQDNSRFQDPSSCKEGLWQDLVNSTFIPKSKETRHHGTAASKGKKKLDLSRKHHQATQDKPETSGSGERKRPSAELIPESHHSGDNNPASSSSPEDA
SLCEGNIINEREKMKETAEYKRAIEEEWEARQQQLRIQAEEAQRLRKRKKAEALRILDMQRRQKQRLEEVREIQKKDEENLNTKERLRVEVRKELSLLES
RSVDLASVLRSLGINVGGGFRPASHEVHAAYKRALLKFHPDRASRTDIRQQVEAEEKFKLISRMKEKLFPASLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G69060 Chaperone DnaJ-domain superfam... Lus10019189
[exp]
0 1
AT5G45760 Transducin/WD40 repeat-like su... Lus10029246
[exp]
2.6 0.9312
AT3G56680 Single-stranded nucleic acid b... Lus10038997
[exp]
2.8 0.9380
AT1G13570 F-box/RNI-like superfamily pro... Lus10030920
[exp]
3.5 0.9354
AT5G53220 unknown protein Lus10001067
[exp]
4.5 0.9293
AT3G06850 DIN3, LTA1, BCE... DARK INDUCIBLE 3, 2-oxoacid de... Lus10037492
[exp]
4.6 0.9393
AT2G39950 unknown protein Lus10028266
[exp]
5.5 0.9314
AT1G12680 PEPKR2 phosphoenolpyruvate carboxylas... Lus10036464
[exp]
8.0 0.9111
AT5G06560 Protein of unknown function, D... Lus10016203
[exp]
8.1 0.9281
AT2G27760 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (... Lus10020566
[exp]
8.1 0.9264
AT1G68310 AE7 AS1/2 ENHANCER7, Protein of un... Lus10035403
[exp]
10.3 0.9051

Lus10019189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.