Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036826 [exp] 178 / 5e-59 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138700 [exp] 50 / 8e-09 AT1G69050 / unknown protein Potri.008G109150 [exp] 47 / 8e-08 AT1G69050 49 / 2e-09 unknown protein Potri.T139662 [exp] 47 / 8e-08 AT1G69050 49 / 2e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019190 pacid=23141820 polypeptide=Lus10019190 locus=Lus10019190.g ID=Lus10019190.BGIv1.0 annot-version=v1.0 ATGGATCATCATAGCTGCGCGACAATGGAGGATCCTCCTCAGCCTGCTACGCCTTCGTTTCCAGGGTTCCAGAGCTCCATGCACAGAGACGAGATGGAGT ACGAGAGAGTGCTGACTAGGCTACAGAGACGAGCGCCTACTCAGCTTCTTATCGACAATAAGCATATCTTCCCCACCGTTGACTCTGCTTCTGCTACTTA CCCTTCTCCTCAAACCTGTCCGGCGAGATTCGGGTCTTCATCCGGGTCGGGTTCTTTCAATAAGGGTGGTGGTAAGCAAGATCCGATTCCTCTGCTGACG CCTCTGGTTTCGCCGACGGCTGCAGGACTGGGACAGCAGATGCAGAAGCAGGGGATTTCTTCTTTGTGCTTTGTTACGCATGGAGATTGA
AA sequence Show only first row Show all	>Lus10019190 pacid=23141820 polypeptide=Lus10019190 locus=Lus10019190.g ID=Lus10019190.BGIv1.0 annot-version=v1.0 MDHHSCATMEDPPQPATPSFPGFQSSMHRDEMEYERVLTRLQRRAPTQLLIDNKHIFPTVDSASATYPSPQTCPARFGSSSGSGSFNKGGGKQDPIPLLT PLVSPTAAGLGQQMQKQGISSLCFVTHGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019190 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	2.2	0.9514
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	5.2	0.9254
AT3G50150			Plant protein of unknown funct...		Lus10004516 [exp]	7.1	0.9279
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021620 [exp]	7.1	0.9025
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040932 [exp]	7.7	0.9153
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	11.7	0.9343
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	16.5	0.9255
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	17.7	0.9303
					Lus10026417 [exp]	18.1	0.9030
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	18.3	0.9324

Compare expression of checked genes

Lus10019190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.