Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 434 / 1e-152 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 387 / 2e-134 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 284 / 4e-94 ACR6 ACT domain repeat 6 (.1) AT1G12420 265 / 1e-86 ACR8 ACT domain repeat 8 (.1) AT1G76990 258 / 7e-84 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT4G22780 235 / 8e-75 ACR7 ACT domain repeat 7 (.1) AT5G25320 218 / 9e-68 ACT-like superfamily protein (.1) AT5G65890 170 / 4e-50 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 51 / 4e-07 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 47 / 9e-06 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036827 [exp] 554 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 319 / 2e-107 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 311 / 2e-104 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 301 / 1e-100 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 300 / 4e-100 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 268 / 5e-88 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10028646 [exp] 268 / 2e-87 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 268 / 2e-85 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 204 / 2e-62 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138600 [exp] 472 / 8e-168 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 471 / 2e-167 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 471 / 1e-166 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 321 / 1e-108 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.001G115600 [exp] 306 / 8e-103 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.012G083000 [exp] 303 / 1e-101 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 303 / 3e-101 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 302 / 4e-101 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.015G100300 [exp] 290 / 3e-96 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 285 / 4e-94 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10019191 pacid=23141786 polypeptide=Lus10019191 locus=Lus10019191.g ID=Lus10019191.BGIv1.0 annot-version=v1.0 ATGCAAGTGACCGATGAGGAGACGGACTCTGCGATTACTGATCCGGAAAAGCTAGCTAGAATCAAGGAGCTCCTTCGTAACGTGCTGAGTGGTAGCAACA GGTCTAGGGGAGCTAAGACCGTTGTGTCTCAAGAAGCAGCCATTCATACCGATAGGAGGCTGCACCAGATGATGTTTGCTGATAGGGACTATGAGAGGAA TGGAATTGATCATGAGAAGGAAAAGCCTGATGTTACTGTGGTGAATTGGTATGATAAGGACTACTCAGTAGTGACTATTAGGTGTAAAGACAGGCCAAAG CTTCTGTTTGATACTGTCTGCACTTTGACTGACATGGAGTATGTTGTGTTTCATGCCAACATTGATGCTGAAGGACCAGAAGCTTACCAGGAATTCTATG TAAGGCATGTTGATGGGTCCCCTGTGAAATCTGATGCTGAGAGAGAAAGAGTCATACAATGCCTTGAGGCAGCAATTGAGAGAAGAGTATCTGAGGGTCT GAAGCTTGAGCTGTGCACAACTGATAGAGTTGGCTTACTATCAGACGTGACTCGAATCTTTCGAGAGAACAGCCTAACAGTCACAAGAGCAGAAGTGACC ACAAGAGGAGGCAAAGCTCTCAACATATTCTACGTTCGCGAAGCTTCAGGCTGTCCCGTGGATGCTAAGACCATTGATGCGATTCGTCAAGTGATTGGTC AGACAATACTCAAGGTCAAAGGTTGCCCTGACGATTCGAAGCAAGCCTCTCAGGAATCACCAACAAGGTTCCTGTTTGGAAGCCTGTTCAAGTCCAGATC TTTTGTCAACTTTGGATTGGTTAGGTCCTATTCTTGA
AA sequence Show only first row Show all	>Lus10019191 pacid=23141786 polypeptide=Lus10019191 locus=Lus10019191.g ID=Lus10019191.BGIv1.0 annot-version=v1.0 MQVTDEETDSAITDPEKLARIKELLRNVLSGSNRSRGAKTVVSQEAAIHTDRRLHQMMFADRDYERNGIDHEKEKPDVTVVNWYDKDYSVVTIRCKDRPK LLFDTVCTLTDMEYVVFHANIDAEGPEAYQEFYVRHVDGSPVKSDAERERVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVT TRGGKALNIFYVREASGCPVDAKTIDAIRQVIGQTILKVKGCPDDSKQASQESPTRFLFGSLFKSRSFVNFGLVRSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10029293 [exp]	2.0	0.8052
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	3.5	0.7877
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	5.7	0.7629
AT4G37420			Domain of unknown function (DU...		Lus10012255 [exp]	6.1	0.7338
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	6.9	0.8093
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	15.9	0.7919
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	20.0	0.7848
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	24.4	0.7105
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	25.1	0.7575
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	25.1	0.6873

Compare expression of checked genes

Lus10019191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.