Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036829 [exp] 427 / 1e-149 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4) Lus10026682 [exp] 143 / 1e-38 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4) Lus10004632 [exp] 134 / 6e-36 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4) Lus10036830 [exp] 65 / 1e-12 AT2G03830 40 / 6e-05 root meristem growth factor 8, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111800 [exp] 53 / 2e-07 AT2G03810 84 / 4e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4) Potri.010G138100 [exp] 52 / 3e-07 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019193 pacid=23141778 polypeptide=Lus10019193 locus=Lus10019193.g ID=Lus10019193.BGIv1.0 annot-version=v1.0 ATGGATGATTTTGCAGGAAGTGGTGACGTGGAGCTGAGAAGATTCGTGGAGCCACTACCGTCTATAGTACTAGCTCATGAAATGACTGTTCGCAACTACG AAGAGAACTCAAACCATGCTGTCAAGGACATCTGTGTGGACGAAGGGTTGCCCTTGCACGACAAGTTCTTGTTCGACACGAATATGGATTACGATGTTGA GTACTTGTCCACGTTCTTGTCTCCCGGGAAAGCTGGAAATGGTGGAGAAGAGGTGGTTAAAGATTCAGTTGTTGAACTTATTATTCTTGAGCCAATTGTT CCAAATTCGTCCATTGAAGGATCAGAAACTGCTGAAATTCGCTGTGAGGAAGCACTTAGTGAAGCATCCGCAAATTCAACTGGTAATGATGCATCGAAAA TGAGCCATTCGCTTGGAGATTCGCTTGTACTGCTAGAACCAGGCACAGATTGTTCTGGTCATGCCCCGTTGACCGATCAAACGAGTGGCATTCAACAAGA TTCTCCTCAGGATTCTGATCCTCCTGCATCGAAAGAAACATCTTCAAATGCAGCCATTCACGAGGAGGACATTACGCCCGAAAGGCACAGTCTGGATTCT CTACCTGATGAACTGACCCATGAAGTCGCTGCTCGGTTATCTTTCGACACTAAAGTCGATAATACCACTGCATCAACACCAACAGAAAATATTGATCCTC AGCAAGAACTGAAGACACCATTCTCTTCCAAGATCGTTTCTGAACCGGCTCCTTACTCAGGAAGCATCTCCATGAGATCAGACAGCAGCACGACCAGCAC TCGCTCTTTCGCTTTCCCAGTAATGAATGGAACGCTAGTCCGGTCAGGATGGCGAAAGCTGACAGGAGACATCTCAGGAAGCACAGGCGTTGGAGACAGA GCATCCTCTGCTATTGAAGTCCATCAAAACAACAAGGGAGATCATCATCTCCATGACGGCAACGTGTACAAGGAAGAAGACGGTGCATCAACATTGACAT CGTCAGGTGTGTGTTCGATGGTATTGATTGAGACTCGAACATGA
AA sequence Show only first row Show all	>Lus10019193 pacid=23141778 polypeptide=Lus10019193 locus=Lus10019193.g ID=Lus10019193.BGIv1.0 annot-version=v1.0 MDDFAGSGDVELRRFVEPLPSIVLAHEMTVRNYEENSNHAVKDICVDEGLPLHDKFLFDTNMDYDVEYLSTFLSPGKAGNGGEEVVKDSVVELIILEPIV PNSSIEGSETAEIRCEEALSEASANSTGNDASKMSHSLGDSLVLLEPGTDCSGHAPLTDQTSGIQQDSPQDSDPPASKETSSNAAIHEEDITPERHSLDS LPDELTHEVAARLSFDTKVDNTTASTPTENIDPQQELKTPFSSKIVSEPAPYSGSISMRSDSSTTSTRSFAFPVMNGTLVRSGWRKLTGDISGSTGVGDR ASSAIEVHQNNKGDHHLHDGNVYKEEDGASTLTSSGVCSMVLIETRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	0	1
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	1.7	0.8681
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	3.5	0.8365
AT2G03810			18S pre-ribosomal assembly pro...		Lus10036829 [exp]	4.7	0.8090
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	7.4	0.8312
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	8.2	0.8394
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	8.7	0.8354
AT3G22250			UDP-Glycosyltransferase superf...		Lus10031068 [exp]	9.2	0.7516
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	9.8	0.7963
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	9.8	0.8074
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	10.5	0.8092

Compare expression of checked genes

Lus10019193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.