Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69030 253 / 1e-82 BSD domain-containing protein (.1) AT1G26300 252 / 3e-82 BSD domain-containing protein (.1.2) AT3G24820 113 / 6e-30 BSD domain-containing protein (.1) AT3G49800 47 / 9e-06 BSD domain-containing protein (.1) AT5G65910 47 / 1e-05 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036831 [exp] 496 / 2e-178 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10025929 [exp] 106 / 4e-27 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1) Lus10038170 [exp] 105 / 4e-27 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10011556 [exp] 48 / 6e-06 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 47 / 1e-05 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137900 [exp] 328 / 4e-112 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.008G111900 [exp] 324 / 1e-110 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.002G242200 [exp] 124 / 3e-34 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1) Potri.014G008400 [exp] 57 / 7e-09 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 50 / 8e-07 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 45 / 4e-05 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10019194 pacid=23141733 polypeptide=Lus10019194 locus=Lus10019194.g ID=Lus10019194.BGIv1.0 annot-version=v1.0 ATGGAAGATCTATGGAAGAGAGCCAAGCTGTTCGCGGAGGAGGCGGCGAAGTCGCCGACGATAACATCCTCCTCGAACAGGATCGCCGATCTGGTCGCGG AGACGGCGAAGAAGTCCAAGGAGCTGGCCATCGAGGCGTCCAAGAAGGCCGACGAGTTCAAGGTCGCAGCTATGAAGCAGGCCGACCAGATCCAGATCAA GTCCATCTCGGACATAATTCCTTCTCAGCTCTCCTCCCTCTCCATCGTCAACAGCGGCGGCGCTTCCTCCGGCGCCAATACTGATGATGCCGCCGTCGTG TCCGAGGAGGAGCTCCGGAGGTTTGGGATCACCGATGATTTGAGGGATTTCGTTAAGGGACTGACGTCCAGTACATTCCAGAACTTTCCGATTCAAGATG TTCCTGCTCCGGATGATGGAGTGGCTACTGGATCGAATGTGAGGAAGGATCTTAATGAGTGGCAGGGGAGGCATGCCACTCTTGTTCTTTCCACTGTTAA GCAAATCTCGAAATTGAGATATGATTTGTGCCCGCGAGTTATGAAAGAAAGGAGATTCTGGAGGATTTATTTCACACTAGTGAGCACTCATGTTGGGCCG TATGAACGCGAGTATCTGGAAAAGGCTAAGCGCAAAGCTGAAGAGCAGATAAAAGATGAGAAAAACAAGCAAACTGCTGCAAATACATCTGCATCGGATG GATCAGAAAGGTCGAAGTTGGAAAGTAAGAAATCGAACGTGTCGACAGAACAGGACTTGGATACGTTTCTTCTGGGTGATCTCGAAGATAGCGATGGAGG AGCGGACATTGGCGATAACGATGATGGAAACTTCGATGATGACTTCGACAAGATTGACAATTCAGTAAGTTCTCCCAAACCAAGCATTTTGCACAAAATT CCCATCCCAAACCAGAGATTGACAATGTCGCATGCCAACCTGCAGGACATTGAGGATGACATGAAGGATCTGAAGAAGGCAACAAAAGATTGTGCAACCA CAAGCTAG
AA sequence Show only first row Show all	>Lus10019194 pacid=23141733 polypeptide=Lus10019194 locus=Lus10019194.g ID=Lus10019194.BGIv1.0 annot-version=v1.0 MEDLWKRAKLFAEEAAKSPTITSSSNRIADLVAETAKKSKELAIEASKKADEFKVAAMKQADQIQIKSISDIIPSQLSSLSIVNSGGASSGANTDDAAVV SEEELRRFGITDDLRDFVKGLTSSTFQNFPIQDVPAPDDGVATGSNVRKDLNEWQGRHATLVLSTVKQISKLRYDLCPRVMKERRFWRIYFTLVSTHVGP YEREYLEKAKRKAEEQIKDEKNKQTAANTSASDGSERSKLESKKSNVSTEQDLDTFLLGDLEDSDGGADIGDNDDGNFDDDFDKIDNSVSSPKPSILHKI PIPNQRLTMSHANLQDIEDDMKDLKKATKDCATTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	0	1
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	3.5	0.8610
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	3.6	0.8763
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	5.3	0.8733
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	9.2	0.8694
AT5G17620			unknown protein		Lus10013643 [exp]	10.6	0.8449
AT1G26300			BSD domain-containing protein ...		Lus10036831 [exp]	12.0	0.8327
AT1G54730			Major facilitator superfamily ...		Lus10029962 [exp]	15.7	0.7345
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10039598 [exp]	18.2	0.8308
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	19.4	0.8200
AT2G41150			unknown protein		Lus10018111 [exp]	20.3	0.7584

Compare expression of checked genes

Lus10019194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.