Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 576 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 573 / 0 O-fucosyltransferase family protein (.1) AT2G03280 510 / 2e-178 O-fucosyltransferase family protein (.1.2) AT1G14020 510 / 3e-178 O-fucosyltransferase family protein (.1) AT2G37980 388 / 1e-128 O-fucosyltransferase family protein (.1) AT1G22460 382 / 4e-127 O-fucosyltransferase family protein (.1) AT3G54100 382 / 3e-126 O-fucosyltransferase family protein (.1) AT5G35570 375 / 2e-123 O-fucosyltransferase family protein (.1) AT5G64600 370 / 5e-123 O-fucosyltransferase family protein (.1) AT5G01100 371 / 7e-122 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036832 [exp] 981 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 570 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 568 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 567 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 567 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036833 [exp] 535 / 0 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 529 / 0 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 528 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 523 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101300 [exp] 590 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 581 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 577 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 569 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 514 / 8e-180 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 513 / 3e-179 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 386 / 4e-129 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 377 / 6e-126 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 381 / 8e-126 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 380 / 2e-124 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019195 pacid=23141743 polypeptide=Lus10019195 locus=Lus10019195.g ID=Lus10019195.BGIv1.0 annot-version=v1.0 ATGGAAAAGCAATTGGAAGAAGGGTTTCACCCTCACCACGAACAGCTTATCACTCACAGAAAGACAGACTCCGACGACGGCGTCATCGGCGGCGACGATG AGAAGCCGTACGGCGTCGGTGGCAAGATGAAGCTGGTGAAGAAGTACTACATGAACATGATGAAAGCAGAGAAGAAACTCAAGGCTGCGAAACTACATAT GTGGGCTGTTCGGCTCACCACCATGCTCCTCTTTATGGCCATTTTGTTGCAGTTGAAAGCACTGGGAAGAAGCTACTCTCGCCACCGCGGCGGCGGCGGG GAGACTGACTTCTACCGGTCTCTGCCTCCTGAGAGGATTTATGAGAGCAATGGTTACTTAATGATATCCTCTAATGGAGGGTTGAACCAAATGAGATCCG GTATATGTGACATGGTGACCGTCGCAAGGTATATGAATGCCACACTAATTGTCCCCGAACTCGACAACACATCTTTCTGGAATGACCAAAGCCAATTCGC GGACATATTTGACGTGGACTACTTCATCGCATCACTAAGAGATGAAGTGAAGATCCTGAAACAACTTCCTGAAGAACCCAAGAAGAAGATTGTAGACTCG GGCTTCCTCTACTCAATGCCGCCGGTTAGCTGGTCCAACATGTCGTATTACAATGACAAGATCCTGCCACGGATCAAGTCGTTCGAGGTCCTCCAGCTGA CCAAATCTGATGGGAGGTTGGCCAACAACGGCTTGCCGGATGAAGTCCAGAAGCTGAGGTGCAGGGTGAACTACCAGTCGTTGAGATTCGCTCCTCCGAT CGAAAAGCTGGCTAAGAAGATTGTCAGAGTCCTTAGGCAGAACGGAGAGTTCCTCGTCCTTCATCTCCGGTACGAGATGGACATGCTGGCGTTTTCGGGT TGTAACGAGGGCTGCTCGAGCCAAGAAATCGAGCAACTCGCTGCAATGAGGTATGCATATCCATGGTGGAAAGTGAAGGAAATTGACTCGGAGAAAGTCC GGAGAGAAGGGTTGTGTCCCCTGACACCTGAGGAGACCGCGATGGCACTGCAGGCACTCGACATCAACCCGAAGATTCAAATCTACATCGCGGCCGGAGA CATATACGGAGGGGAGAGGAGGCTAGCCAGCCTGAGGAAAGCATTTCCCAGGTTGGTCAAGAAGGAAACCTTGCTGCCCGAATCGGACTTGGCTCCATTC AGGAACCACTCGAACCAGATGGCAGCGTTGGACTACCACGTAGCAATTGAGGCTGACATCTTTGCACCAACGTACGGTGGGAACATGGCCAAGGTGGTTG AAGGTCACAGAAGGTTCTCAGGATACAGGAAGACCATTGCTCTGGACAGGAAGGCTATAGTGAGACTGGTGGATATGTACAAGAACGGGGAGCTGAAGTG GGACGAGTTCTCGACCGAGATGAAGCGAGCTCACTCAGATCGAATGGGGCAGCCGACGAGAAGGGTGGAGATTCCTGGGCAGCCCAAGGATGAAGACTAC TTCTACACCAACCCGCAAGAGTGTATGACTCAGTGGATTACAAACTAA
AA sequence Show only first row Show all	>Lus10019195 pacid=23141743 polypeptide=Lus10019195 locus=Lus10019195.g ID=Lus10019195.BGIv1.0 annot-version=v1.0 MEKQLEEGFHPHHEQLITHRKTDSDDGVIGGDDEKPYGVGGKMKLVKKYYMNMMKAEKKLKAAKLHMWAVRLTTMLLFMAILLQLKALGRSYSRHRGGGG ETDFYRSLPPERIYESNGYLMISSNGGLNQMRSGICDMVTVARYMNATLIVPELDNTSFWNDQSQFADIFDVDYFIASLRDEVKILKQLPEEPKKKIVDS GFLYSMPPVSWSNMSYYNDKILPRIKSFEVLQLTKSDGRLANNGLPDEVQKLRCRVNYQSLRFAPPIEKLAKKIVRVLRQNGEFLVLHLRYEMDMLAFSG CNEGCSSQEIEQLAAMRYAYPWWKVKEIDSEKVRREGLCPLTPEETAMALQALDINPKIQIYIAAGDIYGGERRLASLRKAFPRLVKKETLLPESDLAPF RNHSNQMAALDYHVAIEADIFAPTYGGNMAKVVEGHRRFSGYRKTIALDRKAIVRLVDMYKNGELKWDEFSTEMKRAHSDRMGQPTRRVEIPGQPKDEDY FYTNPQECMTQWITN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	1.0	0.9974
					Lus10030912 [exp]	2.0	0.9961
					Lus10003755 [exp]	4.5	0.9899
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	5.9	0.9887
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	6.0	0.9886
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019196 [exp]	6.5	0.9953
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	8.8	0.9277
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	10.6	0.9882
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	10.7	0.9874
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	11.3	0.9882

Compare expression of checked genes

Lus10019195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.