Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 540 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 538 / 0 O-fucosyltransferase family protein (.1) AT1G14020 489 / 6e-170 O-fucosyltransferase family protein (.1) AT2G03280 471 / 5e-163 O-fucosyltransferase family protein (.1.2) AT2G37980 382 / 4e-126 O-fucosyltransferase family protein (.1) AT5G64600 365 / 5e-121 O-fucosyltransferase family protein (.1) AT3G54100 369 / 8e-121 O-fucosyltransferase family protein (.1) AT5G01100 364 / 3e-119 O-fucosyltransferase family protein (.1) AT5G35570 359 / 4e-117 O-fucosyltransferase family protein (.1) AT1G22460 354 / 3e-116 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036833 [exp] 980 / 0 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 550 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 547 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 539 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 537 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 535 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 528 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 499 / 2e-173 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 493 / 5e-171 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101300 [exp] 547 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 534 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 531 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 521 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 486 / 7e-169 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 483 / 1e-167 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 379 / 2e-126 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 377 / 2e-125 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 367 / 9e-122 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 359 / 4e-116 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10019196 pacid=23141826 polypeptide=Lus10019196 locus=Lus10019196.g ID=Lus10019196.BGIv1.0 annot-version=v1.0 ATGGCAATTCAGGCAGTTTTGGAAAACAAGACTACCAAGGTTGCTGTCCCAGATGATGGAAAGATGAAATTCAAGAAGATCAGAAGGGTGAAGCTGAAGA ACCTGATCATCAGGGCGGTGAATGCTCACAAGGCGAATTCGAACAATGTTGGTTCTGGTTCCGGCTTGTTCGGTGAATCGAGGACTTTCGCCGTAGGGAT AACGTTGGTGGTGGTTGTCATGTGGGCTTGCGCAATGCAGTCGATTTTGTTCCGGAATGTCGAATGGAGAATGATGAGTGTCAAGTTTCTGAATCCTGCT GCTTCACTTCTGATACCTGAAAGAGTTTACCACAACAATGGATACCTGACTGTTTCGTCGAATGGGGGATTGAACCAAATGCGGTCTGGAATTTCAGACA TGGTTACAATAGCAAGATTCCTGAACCTTACACTTGTGGTTCCTGAACTGGACAACACCTCCTTCTGGCAAGATACCAGTCAGTTTGCAGACATATTTGA TGTGGATCACTTCATCAATTCATTGAGGGATGAGCTCAGGATTGTCAAAGAGCTGCCTCCTGAACAGAAGCAACAGCTCGAGAATCGGCCGCTTTACCAA ATGGCAACTCGTAGCTGGTCCAACATGTCCTATTATCTCCAGACGGTTCTGCCGGTCTTCAGAAAACATGGAATAGTCCGGTTCCTGAAGACCGATGCTA GACTTTCGAACAACGAGCTTCCTGAGGAGGTTCAGAAGATGAGATGCAGGGTTAACTATGAAGGTCTCAAGTTCACTCCATCGTTGGAGAAGATAGGAAA GAAGGTTGTAAGCATCCTGAGGAAGAAAGGTCCATTCTTGGCTCTTCATCTCAGATATGAAAAGGATATGCTGGCATTCACAGGTTGTACAAAGGAGCTT AACAAACATCAAGTTCGAGAGCTTACATCGATGAGGTATGCATGTCCATGGTGGAAAGAGAAGGATATAAACTCAACCAAAAAAAGGGAAGATGGGTTAT GCCCTTTGACACCAGGGGAGGTTGGACTTGCACTCAAGGCTCTTGACATTGATCCCAACATCCAAGTCTACATTGCTGCTGGAGAGATCTATGGAGGGAA GAAGTCACTCGACGATCTTCGAACTTTCTATCCGAATCTGGTGAAGAAGGAAACATTGCTACTAGCATCAGACTTAACAGACATTAAAAACTACTCCAAC AGAATGGCAGCAGTGGATTACATTGTGTCTTTAGCAAGTAACATATTCTCCCCAAGCTACGATGGCCACATGGCCAAAGTTGTCGAAGGCCACCGTCGGT ATCTTGGATACAAGAGAACCATAAGGCTAGATAGAAAGGTTCTGGTGACACTAATAGACAAGTACAGAAGTGGCATGAGCAGTTGGGACGAGTTTTCGAG ATCGGTGAAGGCAGCACATAGGAAGCTAATGGGTGATCCAATTGAGAGACTGAAGATCCCTGGCAAACCAAAAGAAGAGGATTATTTCTACATAGATCCT GAGGAATGCTTGCCACCAATTGTTCATCCTTCAAGGGGTAAAAGAAGTTCAAGCAAGAGAAAGCCTTAA
AA sequence Show only first row Show all	>Lus10019196 pacid=23141826 polypeptide=Lus10019196 locus=Lus10019196.g ID=Lus10019196.BGIv1.0 annot-version=v1.0 MAIQAVLENKTTKVAVPDDGKMKFKKIRRVKLKNLIIRAVNAHKANSNNVGSGSGLFGESRTFAVGITLVVVVMWACAMQSILFRNVEWRMMSVKFLNPA ASLLIPERVYHNNGYLTVSSNGGLNQMRSGISDMVTIARFLNLTLVVPELDNTSFWQDTSQFADIFDVDHFINSLRDELRIVKELPPEQKQQLENRPLYQ MATRSWSNMSYYLQTVLPVFRKHGIVRFLKTDARLSNNELPEEVQKMRCRVNYEGLKFTPSLEKIGKKVVSILRKKGPFLALHLRYEKDMLAFTGCTKEL NKHQVRELTSMRYACPWWKEKDINSTKKREDGLCPLTPGEVGLALKALDIDPNIQVYIAAGEIYGGKKSLDDLRTFYPNLVKKETLLLASDLTDIKNYSN RMAAVDYIVSLASNIFSPSYDGHMAKVVEGHRRYLGYKRTIRLDRKVLVTLIDKYRSGMSSWDEFSRSVKAAHRKLMGDPIERLKIPGKPKEEDYFYIDP EECLPPIVHPSRGKRSSSKRKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019196 [exp]	0	1
					Lus10030912 [exp]	1.0	0.9997
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	5.3	0.9966
					Lus10023587 [exp]	6.5	0.9966
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	6.5	0.9953
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	7.5	0.9966
					Lus10021782 [exp]	8.4	0.9966
					Lus10007927 [exp]	9.2	0.9966
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	9.9	0.9966
AT1G48120			hydrolases;protein serine/thre...		Lus10015869 [exp]	10.6	0.9966
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	10.9	0.9921

Compare expression of checked genes

Lus10019196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.