Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03890 852 / 0 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 811 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 775 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 351 / 2e-113 Protein kinase superfamily protein (.1.2) AT2G40850 343 / 3e-110 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT2G46500 211 / 3e-60 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 210 / 9e-60 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 200 / 8e-59 Protein kinase superfamily protein (.1) AT1G27570 67 / 2e-11 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 46 / 2e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036834 [exp] 1240 / 0 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 693 / 0 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10000012 [exp] 232 / 5e-73 AT1G26270 122 / 3e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) Lus10000011 [exp] 223 / 1e-69 AT1G26270 122 / 5e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) Lus10018104 [exp] 221 / 1e-63 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10022411 [exp] 219 / 1e-62 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 213 / 3e-61 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 213 / 2e-60 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 205 / 2e-60 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 959 / 0 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 901 / 0 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 684 / 0 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 370 / 2e-120 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.012G014600 [exp] 220 / 2e-63 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 218 / 4e-62 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 208 / 7e-59 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.014G099000 [exp] 207 / 2e-58 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10019197 pacid=23141715 polypeptide=Lus10019197 locus=Lus10019197.g ID=Lus10019197.BGIv1.0 annot-version=v1.0 ATGTCTCGGAAGTTGGACAGCCCAGTTCAGACACAAATGGCGGTTTCAGTCTTCAAGAGCCCTCTCGCCGGTGAGCATCATCATGGGAAGCAACTCGCTG GGAGGAGGAGAGTTTTCGTGCAGACCGAGACTGGTTTCGTACTGGGGATGGATCTGGACCGAAGTGACAATGCTCATACCGTGAAGAGGAGGCTCTCGGT CGCTCTAAATGTCTCAACAGAGGAGAGTTCGTTGACTTTCGGGGATGTGGTGCTGAAGAACGACCTCAGTGCTGTTCGTAACGATTCGCCGCTCCTTTTG ACTCGGAACTACCTCCACAGAAGCTCGTCCACTCCGTGTCTTTCCCCCACTGGAAAGGACATTCAGAAGAAGGATCAGAGCCCACTTATCGAGGTTTTAG GGCATGGACATTCAGATAGCTTCTCGAAGATGAAGCAGCTGGTTAAGGAGAGTGTGAAGGCGATGAAGATGGGTGTCGATCCTCACCCGGTCCATGGTGG GCTTGGAGGTGCCTACTTCTTCAGGAACAGCAGAGGGGAGAATGTTGCGATTGTGAAGCCGACTGACGAAGAGCCTTTTGCTCCGAACAATCCGAAAGGT TTCGTTGGGAAGGCTCTTGGACAGCCCGGTTTGAAACGTTCTGTTCGGGTTGGAGAGACTGGGATTCGAGAAGTTGCTGCTTACCTTCTTGACCGTGGCC ATTTTGCCTGTGTTCCCCCTACTGCTCTGGTGAAGATCACTCACTCGATCTTCAACATCAACGATTCGGTGAACAATGGCAGTAATGGTAATGGTAAGGC TCAAACCAAGAAGCAGGTGAGCAAAATTGCGTCTTTCCAGCAGTTCATTCAGCACGATTTTGATGCCAGCGATTACGGGACTTCGAGCTTCCCTGTCTCT GCTGTGCATCGTATAGGTATATTGGATATTAGGATTTTCAACACGGATAGGCACGGTGGGAATCTCTTGGTGAAGAAGCTTGATGGTGTTGGTAGATTCG GACAAGTGGAACTGATTCCTATCGATCACGGTCTTTGCTTACCGGAGACGTTGGAGGATCCGTATTTCGAATGGATTCATTGGCCGCAGGCTTCGATTCC TTTCTCGGAAGACGAGATTGAGTACATTGCTAAGCTAGACCCTAATGAGGATTGTGTGATGTTGCGGAGAGAGCTCCCGATGATTCGAGAGGCTTGTCTT AGAGTGTTGCATCTCTGCACGATTTTCCTCAAGGAAGCCGTCACTTATGGTCTTTGTCTTGCTGAGATCGGCGAGATGATGAGTAGAGAGTTTCGGTCTG GTGAGGAGGAACCCAGTGAGCTTGAGGTTCTGTGCATGGAGGCTAGGAGACTGATAGTGGAGAGGGAGGTGCTGTCTCCGAGAACTGATGTTGGAGATTC GGAGTTCCTCTTTGACATCGATTGCGAGGAAGTCAATCACGACCGTGATCATGACTTCTCGACCAAGATGACTGCTGATGAGTACATGTACAGGCCACCG TACCAATTCGGGCTTGGGAACGGGATGGGTCGTAGCATGCTTTCGAAGCTTGACGAAAGCGTAGAGGAGGAAGAAGAAGCAGAGAGTGAAGGAGAGGACG GGCGAGAGGAATTTGCGGCAGCTCTCCCTGCTGCTGCTCCAGTGAACTTCCCGTCGATCTCCATGCTCTCTGCATCTCTGAAGGATACAAAGCTGAGTGA CAAGACTCCCAAGTACCCGAAATTCTCGGGGCTTGCCAAGCCGGAGAATGGGTACACAGTAACAAACTCGTCATCAGGGCACAGGAGTGCGAACGAGCAG CTTCCTTCGAGTGTGAGCTTTGTGAACCTTGTGGATATGCCTGATGAGGAGTGGGGGATGTTCATGGAAAAGCTTCAGGAGCTGCTGTATCCAGCGTTTG CAAAGCGAAAGTCTGTGACTTTAGGGCAGAAGCTGAGGCAGAGGCTTGGGACTTCATGCCAGTTTTGA
AA sequence Show only first row Show all	>Lus10019197 pacid=23141715 polypeptide=Lus10019197 locus=Lus10019197.g ID=Lus10019197.BGIv1.0 annot-version=v1.0 MSRKLDSPVQTQMAVSVFKSPLAGEHHHGKQLAGRRRVFVQTETGFVLGMDLDRSDNAHTVKRRLSVALNVSTEESSLTFGDVVLKNDLSAVRNDSPLLL TRNYLHRSSSTPCLSPTGKDIQKKDQSPLIEVLGHGHSDSFSKMKQLVKESVKAMKMGVDPHPVHGGLGGAYFFRNSRGENVAIVKPTDEEPFAPNNPKG FVGKALGQPGLKRSVRVGETGIREVAAYLLDRGHFACVPPTALVKITHSIFNINDSVNNGSNGNGKAQTKKQVSKIASFQQFIQHDFDASDYGTSSFPVS AVHRIGILDIRIFNTDRHGGNLLVKKLDGVGRFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDEIEYIAKLDPNEDCVMLRRELPMIREACL RVLHLCTIFLKEAVTYGLCLAEIGEMMSREFRSGEEEPSELEVLCMEARRLIVEREVLSPRTDVGDSEFLFDIDCEEVNHDRDHDFSTKMTADEYMYRPP YQFGLGNGMGRSMLSKLDESVEEEEEAESEGEDGREEFAAALPAAAPVNFPSISMLSASLKDTKLSDKTPKYPKFSGLAKPENGYTVTNSSSGHRSANEQ LPSSVSFVNLVDMPDEEWGMFMEKLQELLYPAFAKRKSVTLGQKLRQRLGTSCQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	0	1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	1.0	0.9357
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	5.7	0.7269
AT3G11760			unknown protein		Lus10029364 [exp]	6.9	0.7122
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	9.5	0.7288
AT4G18230			unknown protein		Lus10024587 [exp]	9.9	0.6950
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	13.0	0.7650
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	17.8	0.7945
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	20.8	0.7070
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	21.6	0.7337
AT2G28370			Uncharacterised protein family...		Lus10000718 [exp]	22.8	0.7506

Compare expression of checked genes

Lus10019197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.