Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) AT5G57970 208 / 1e-66 DNA glycosylase superfamily protein (.1.2) AT5G44680 202 / 2e-64 DNA glycosylase superfamily protein (.1) AT1G75090 200 / 8e-64 DNA glycosylase superfamily protein (.1) AT1G15970 199 / 3e-63 DNA glycosylase superfamily protein (.1) AT1G80850 193 / 5e-61 DNA glycosylase superfamily protein (.1) AT3G12710 186 / 3e-58 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019199 [exp] 277 / 8e-95 AT1G13635 222 / 2e-71 DNA glycosylase superfamily protein (.1.2) Lus10036835 [exp] 276 / 4e-94 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10026083 [exp] 193 / 7e-61 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10002310 [exp] 189 / 3e-59 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10036248 [exp] 169 / 1e-51 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10038388 [exp] 96 / 1e-23 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2) Lus10028119 [exp] 42 / 0.0002 AT1G30130 368 / 2e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137300 [exp] 342 / 1e-119 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.008G112300 [exp] 320 / 5e-111 AT1G13635 372 / 9e-130 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 214 / 1e-68 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 213 / 4e-68 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.003G182300 [exp] 202 / 3e-64 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.003G156500 [exp] 202 / 1e-63 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1) Potri.014G041700 [exp] 197 / 1e-62 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 197 / 1e-61 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.010G175300 [exp] 197 / 2e-61 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.001G074700 [exp] 192 / 1e-59 AT5G44680 395 / 7e-137 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10019198 pacid=23141777 polypeptide=Lus10019198 locus=Lus10019198.g ID=Lus10019198.BGIv1.0 annot-version=v1.0 ATGGGAGTGATGGCAACGTTTTATCCTCACTTTCAAAATCTCAATGTTATCTCAAATAAAGGTTATGTTGCATTTCATGACGAGTGTTGGGGTGTTCCAG TTTACGAAGACAACCAATTATTTGAGCTGCTAGCCCTATGTGGCATGTTGATGGACTACAATTGGACTGAAATTCTCAAGAGGAAAGAGCTCATCAGGAA ATCATTTGCTGGATTTGATCCAAACATAGTGGCCAAAATGGATGAAAATGAAATCATGGACATTGTCTCCGATAAGGCCATATCCTTAGCTGAATGCCGA GTTCGATGCATAGTCGACAATGCCAAATGCATCCTCAAGATAGTTAGAGAATTTGGATCGTTCAGTAGCTACATGTGGGGCCACATGAACCACAAGCCAA CGATCAACAAGTTCAGGTACCCTAGAAACGTGCCGTTGAGATCACCAAAGGCGGAGGCGATGAGCAGGGAGTTATTGAGACGTGGGTTTAGATTCGTCGG ACCTGTGATCGTGTACTCATTTATGCAAGCGGCCGGCTTGACTATAGACCACCTCGTCGACTGCTTTAGGTATAAGGAATGTGTCGCGCTTGCTGAGCGA CCCTGGAGGCACATGTAA
AA sequence Show only first row Show all	>Lus10019198 pacid=23141777 polypeptide=Lus10019198 locus=Lus10019198.g ID=Lus10019198.BGIv1.0 annot-version=v1.0 MGVMATFYPHFQNLNVISNKGYVAFHDECWGVPVYEDNQLFELLALCGMLMDYNWTEILKRKELIRKSFAGFDPNIVAKMDENEIMDIVSDKAISLAECR VRCIVDNAKCILKIVREFGSFSSYMWGHMNHKPTINKFRYPRNVPLRSPKAEAMSRELLRRGFRFVGPVIVYSFMQAAGLTIDHLVDCFRYKECVALAER PWRHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	0	1
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	1.0	0.9929
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	1.4	0.9832
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	2.8	0.9814
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	3.0	0.9826
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	4.0	0.9730
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	4.5	0.9806
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	4.9	0.9761
AT5G43230			unknown protein		Lus10015804 [exp]	5.0	0.9564
AT5G42710			unknown protein		Lus10010807 [exp]	7.1	0.9618
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	8.7	0.9606

Compare expression of checked genes

Lus10019198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.