Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13635 215 / 8e-69 DNA glycosylase superfamily protein (.1.2) AT5G57970 147 / 4e-42 DNA glycosylase superfamily protein (.1.2) AT1G75090 140 / 2e-39 DNA glycosylase superfamily protein (.1) AT5G44680 139 / 4e-39 DNA glycosylase superfamily protein (.1) AT1G15970 130 / 1e-35 DNA glycosylase superfamily protein (.1) AT1G80850 128 / 7e-35 DNA glycosylase superfamily protein (.1) AT3G12710 122 / 6e-33 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036835 [exp] 350 / 3e-122 AT1G13635 216 / 2e-69 DNA glycosylase superfamily protein (.1.2) Lus10019198 [exp] 277 / 1e-94 AT1G13635 300 / 4e-103 DNA glycosylase superfamily protein (.1.2) Lus10026083 [exp] 134 / 4e-37 AT5G57970 308 / 6e-104 DNA glycosylase superfamily protein (.1.2) Lus10002310 [exp] 132 / 3e-36 AT1G80850 299 / 3e-100 DNA glycosylase superfamily protein (.1) Lus10036248 [exp] 116 / 3e-30 AT5G44680 383 / 4e-133 DNA glycosylase superfamily protein (.1) Lus10038388 [exp] 86 / 1e-19 AT5G57970 256 / 6e-84 DNA glycosylase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137300 [exp] 239 / 3e-78 AT1G13635 380 / 7e-133 DNA glycosylase superfamily protein (.1.2) Potri.008G112300 [exp] 224 / 2e-72 AT1G13635 372 / 9e-130 DNA glycosylase superfamily protein (.1.2) Potri.006G184700 [exp] 150 / 1e-42 AT5G57970 473 / 8e-168 DNA glycosylase superfamily protein (.1.2) Potri.018G106900 [exp] 149 / 1e-42 AT5G57970 418 / 2e-146 DNA glycosylase superfamily protein (.1.2) Potri.014G041700 [exp] 145 / 2e-41 AT1G75090 332 / 2e-113 DNA glycosylase superfamily protein (.1) Potri.002G133800 [exp] 137 / 3e-38 AT1G75090 333 / 7e-114 DNA glycosylase superfamily protein (.1) Potri.003G182300 [exp] 136 / 7e-38 AT5G57970 286 / 1e-94 DNA glycosylase superfamily protein (.1.2) Potri.010G175300 [exp] 136 / 2e-37 AT3G12710 372 / 1e-128 DNA glycosylase superfamily protein (.1) Potri.008G081000 [exp] 134 / 9e-37 AT5G44680 390 / 6e-135 DNA glycosylase superfamily protein (.1) Potri.003G156500 [exp] 133 / 3e-36 AT5G44680 370 / 8e-127 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase
Representative CDS sequence Show only first row Show all	>Lus10019199 pacid=23141807 polypeptide=Lus10019199 locus=Lus10019199.g ID=Lus10019199.BGIv1.0 annot-version=v1.0 ATGTTCAGGAATAAGGAGGGTAACAACAACAACAACAATAAGCAAGAATGTTGCTACAAGAAGAGGCAGCAGCAGGCAGCAATTGCAAGCATATTCTCGT ACAAGCACTTGAAGAAAGTGTACCCTGTTGGCCTTAACAGGAGCTCTTCTTCTCTATCTTCGATCTCGTCTTCGTCTTCTTTGTCATTGTCTCTCTCGCA GAACTCCAACGACGACTCTTCTTCTTCACTCACCGACGGCCCATCATTTGCTTCTCCTCTTGAACATAATGTCTCCCTGGCCCTCCGGCTCATTGCTCCG TCTCCAAGGAGGGGCCCACCACCATCGCCCCCGCGGTGGGAGGAGGCTCATGATGGTGGTGGTGGTGGTTGTGAGGGTGATGGTGAGCCTAGGAGGAAAT CATTTGCTGGATTTGATCCAAACATAGTGGCCAAAATGGATGAAAATGAAATCATGTCCATCGTCCCCGATAAGGCCATATCCTTAGCTGAATGCCGAGT TCGATGCATAGTCGACAATGCCAAATGCATCCTCAAGATAGTTAGAGAATTTGGATCGTTCAGTAGCTACATGTTGGGGCCAATGAAACAACAACCCACG ATCAACAAGTTCAGGTACCCTAGAAACGTGCCGTTGAGATCACCAAAGGCGGAGGCGATGAGCAGGGAGTTATTGAGACGTGGGTTTAGATTCGTCGGAC CTGTGATCGTGTACTCATTTATGCAAGCGGCCGGCTTGACTATAGACCACCTCGTCGACTGCTTTAGGTATAAGGAATGTGTCGCGCTTGCTGAGCGACC TTGGAGGCATATGTGA
AA sequence Show only first row Show all	>Lus10019199 pacid=23141807 polypeptide=Lus10019199 locus=Lus10019199.g ID=Lus10019199.BGIv1.0 annot-version=v1.0 MFRNKEGNNNNNNKQECCYKKRQQQAAIASIFSYKHLKKVYPVGLNRSSSSLSSISSSSSLSLSLSQNSNDDSSSSLTDGPSFASPLEHNVSLALRLIAP SPRRGPPPSPPRWEEAHDGGGGGCEGDGEPRRKSFAGFDPNIVAKMDENEIMSIVPDKAISLAECRVRCIVDNAKCILKIVREFGSFSSYMLGPMKQQPT INKFRYPRNVPLRSPKAEAMSRELLRRGFRFVGPVIVYSFMQAAGLTIDHLVDCFRYKECVALAERPWRHM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	0	1
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	1.4	0.9832
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	1.4	0.9763
AT1G13635			DNA glycosylase superfamily pr...		Lus10036835 [exp]	3.5	0.9757
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	4.9	0.9642
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	5.3	0.9745
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	5.3	0.9448
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	6.0	0.9671
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	6.3	0.9546
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	6.8	0.9520
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	6.9	0.9620

Compare expression of checked genes

Lus10019199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.