Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13630 640 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G01110 258 / 1e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 258 / 3e-74 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 251 / 7e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 249 / 3e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 243 / 3e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 241 / 2e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 242 / 9e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G55840 246 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 233 / 2e-66 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036836 [exp] 1526 / 0 AT1G13630 689 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036839 [exp] 1446 / 0 AT1G13630 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 256 / 6e-73 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 251 / 7e-71 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 248 / 8e-70 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 245 / 1e-69 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 245 / 1e-68 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 240 / 1e-68 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10042529 [exp] 246 / 2e-68 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137200 [exp] 865 / 0 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 272 / 5e-80 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 263 / 6e-76 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 261 / 1e-75 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 250 / 1e-70 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 245 / 1e-69 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 245 / 4e-69 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G109500 [exp] 239 / 4e-69 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 243 / 6e-69 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 241 / 3e-68 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019200 pacid=23141713 polypeptide=Lus10019200 locus=Lus10019200.g ID=Lus10019200.BGIv1.0 annot-version=v1.0 ATGCTCAGCAGATGGAGAGTACCCCTTTGTCGTCTTCAATTCTCCTCCAAATCCCCAACACTCGCCTCTCTATGTTCATTCGTCTTCCCCAAACCTTCCG TCTCCACCTCCGCCGCTGTTACGTCGCCTTCCGGAAGTTCTGTTGCTCCGTTAGAGAGCCATGGGGACTACAACATCATCCGCGAGATTGTGTACGGGGT TACTCACTTGGGTTTTCGGGGCGTCGAATTGAAGGGCTTGATAACAATGCTGAGCACGGAGCAGGTTGATGCAGTGATCGAAGCTTTGAGCTATCGGAAC GGTGAATCCGCTGTGGATTTCTTCCATTTTTTGAGGATGGAATTCGGGTTTCGGCACTCGGTTGCTTCATCCCTCGTCGTCTCCCATGTTTTAGCGGGAA GGATGATGTTTAGGGAGCTGAGGAATGTCGTCGATCAGATGCTACGAGAAGAAGGATCTGGTTCTGCTCCTATAATTTGTGAGCTGCTCTCTGGTAGTAG GTTTAAGTGTTGTGATTCGACCAATCAGGTATGGGATGTGTTGGCGTTTGCTTATTCAAGATTCGAGATGGTTCACGATGCTCTCTATGTTTTGGTAAAG ATGAAGGATTTGGGTTTTCGGGCTTCCGTGCAGACTTATAATAGTCTCATGTACAATTTGAGACACACTGACACTGTATGGGACGTGTATAATGATATCA AAGCTAGCGGTTCAAGTCCGAATGAGTACTCCAGTTCGATTCTCGTGGATGGTTTATGCAGGCAGTCTAGGTTACCACAGGCGGCTTCATTCATCTGTGG TGGCGAAGATTATGATCAAGTCCCTTCAGTTGTTTCGATCAACACAGTGATGTCAAGGTTCTGTAAATTGGGGTTCGTAGAAGTAGCAAAGTCATTCTTC TGTCTGATGCTGAAATATGGATTGCTTCCTGATGCATATAGCTATAATATTCTCATTCACGGGTTGTGTATAGCTGGTTCGATGGAGGAAGCACTCGAGG TTGCGAGTAGTATGGAGGTTCGAGGTGTACAGCCTGATATAGTAACATACAACGTTCTAGCTAAAGGTTTGAATCTACTAGGGTTGATGAGTGGGGCTAC AAAGATGATTGAAGATATGGTACTGAAACAACGAGATTTAGACAGTGTTACCTATACGATACTGATCTATGGTCATTGCCAAGCTGGGAACGTTTCGGAG GCATTGAAGCTCTACAAGGAGATGCTCTCACGGGGCCTTCAGTTGAGCGTCCTCTCGTTAAGCTTATTGCTTTGTAGTTTATGTAAGATAGGGGAAATAC ATGAAGCATTAAGGATGTTCTCTGCAATGGAAGATAACGGGTTGAAACCTGATCTTGTAACGTATTCTGTTCTCATCCATGGGCTTTGTAAGCAAGGAGA AGTACAGCAAGCTATTCATGTATACAATAAGATGTGTTGTAATGGAATATCTCCAAGCTCTTTAGAACATTGTGCTATTTTGAGGAGTTTTAGGGATAAA GGGATGATACATGAAGCTAGGACATACTTCAATTCTTTGCTGGCTGCTGATGACTGTAGATTGGATATTGTTCTGTATAATGTCATGATCGATGCTTACG GGAAACATGGAGATATCGAGGAGGCCCTGCAGTTGTACAGACAAATAACTGAGAAGGGTATATTTCCCAGCGTAGTGACTTTCAATTCCCTTATTTATGG ACTATGTGCTAATGGAATGATTGATCAGGCTATAAACTTGTTACATACTATCAAGCTGTATGGATTGGTGCCAAACGCAGTAACTTACACGACGATTATG AACGTGTACGCTGAAGGCGGAGATCTGCTGAATGTTCTGGCATTGCTGCAGGAGATGAGGAGAAACAACGTGAAACCATCTCACATCACTTACACCGTGC TGATAAAAGCCTACTGCAGAGAATGGAAGCTGCAGGAAGCTCTCTATTTTCTGGAGGAGATGAAAGCAGAAGGGCTAACTCCTGATGCAATCACTTATAA TATAATTACTTGGCATTTATGCAAAACGAAGAACTTGTCGGGAGCTTTCAGTTTGGTCGAAGAGATGTTGACACATAACCTTCAACCAACCCCTGCCACG TACAACATACTTATCCACGGGCTCTGTGTATGTGGTGATCTGAGAAGTGCTGACAAGCTTCTGATCTCTCTTCAGCAGGATATGAATGTCAAGCTGACAA AAGTTGCTTACGCCACCCTGATCAAGGCATACTGCGCGAAGAGCGGTGATATTCAGAGAGTGGTGGTATTGTTCCATCAAATGCTGGAAAATGGGTTTGA TGTCTCGATTAGAGACTACAGTGCGGTCATCAATCGGTTGTGCAAACGAAATTTTGTAGTTGAAGCCAAATACTTTCTGCAGATGATGTTATGCAATGAC GTTTCCCCTGATTGGGATATCTGTCATGTGATGATTACTACACTACACAGTAACAGCCATTTCGATCAAGTATCCGAGTTGCTTGCTATAGCAGTCAAGT TTGGTTGTATCATGAAACTTTGA
AA sequence Show only first row Show all	>Lus10019200 pacid=23141713 polypeptide=Lus10019200 locus=Lus10019200.g ID=Lus10019200.BGIv1.0 annot-version=v1.0 MLSRWRVPLCRLQFSSKSPTLASLCSFVFPKPSVSTSAAVTSPSGSSVAPLESHGDYNIIREIVYGVTHLGFRGVELKGLITMLSTEQVDAVIEALSYRN GESAVDFFHFLRMEFGFRHSVASSLVVSHVLAGRMMFRELRNVVDQMLREEGSGSAPIICELLSGSRFKCCDSTNQVWDVLAFAYSRFEMVHDALYVLVK MKDLGFRASVQTYNSLMYNLRHTDTVWDVYNDIKASGSSPNEYSSSILVDGLCRQSRLPQAASFICGGEDYDQVPSVVSINTVMSRFCKLGFVEVAKSFF CLMLKYGLLPDAYSYNILIHGLCIAGSMEEALEVASSMEVRGVQPDIVTYNVLAKGLNLLGLMSGATKMIEDMVLKQRDLDSVTYTILIYGHCQAGNVSE ALKLYKEMLSRGLQLSVLSLSLLLCSLCKIGEIHEALRMFSAMEDNGLKPDLVTYSVLIHGLCKQGEVQQAIHVYNKMCCNGISPSSLEHCAILRSFRDK GMIHEARTYFNSLLAADDCRLDIVLYNVMIDAYGKHGDIEEALQLYRQITEKGIFPSVVTFNSLIYGLCANGMIDQAINLLHTIKLYGLVPNAVTYTTIM NVYAEGGDLLNVLALLQEMRRNNVKPSHITYTVLIKAYCREWKLQEALYFLEEMKAEGLTPDAITYNIITWHLCKTKNLSGAFSLVEEMLTHNLQPTPAT YNILIHGLCVCGDLRSADKLLISLQQDMNVKLTKVAYATLIKAYCAKSGDIQRVVVLFHQMLENGFDVSIRDYSAVINRLCKRNFVVEAKYFLQMMLCND VSPDWDICHVMITTLHSNSHFDQVSELLAIAVKFGCIMKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10019200 [exp]	0	1
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10011867 [exp]	21.5	0.6649
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10022391 [exp]	30.3	0.6337
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10034581 [exp]	38.0	0.6014
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024905 [exp]	46.9	0.5915
AT5G45790			Ubiquitin carboxyl-terminal hy...		Lus10014590 [exp]	70.1	0.5851
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	113.3	0.5444
AT2G30480			unknown protein		Lus10034450 [exp]	140.9	0.5480

Compare expression of checked genes

Lus10019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.