Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13620 43 / 7e-06 RGF2 root meristem growth factor 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036841 [exp] 167 / 8e-54 ND 42 / 2e-05 Lus10036838 [exp] 167 / 8e-54 ND 42 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112400 [exp] 39 / 0.0003 AT2G04025 42 / 1e-05 root meristem growth factor 3, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019202 pacid=23141835 polypeptide=Lus10019202 locus=Lus10019202.g ID=Lus10019202.BGIv1.0 annot-version=v1.0 ATGAAGATTTCGTCTTCATCGTCGTCTTTTACGGCTTTACTGATCGTTGTTTTCGTCACCATTGCCACGGTTACTCTGTTGTCTCGTGCCCCGACTTCCA ATCTTACTGCCGTTGTTGTTGCTAACGAGATTGTGCCTTCTATTCCCATCGAGGGACCATCAATGAATGTCATTATTGTCAAAGAGTCGAACATCGAACC TGCGACAAAAACTGTCAAAAGGAGTGATAAGTATCGAAGGAGCAACGGAAAGGGAGATGATCAGAAGAGGGATGGGGAGGCTAAGCATGTTGTAGGAGGA AGGAAATCGATGAAATTCCGTTCTGCTGTTGTTGCTGATGAAACTTCTACTGCTTCGTCGTCGTTTAAGACGTCGAAGCATAACTATGGCAATGATGCTA GGGATCTTGTTGCTTTCACTTCTGATTATCGTTCTCCTAGACATCACCCTCCTAAGAACAACTAA
AA sequence Show only first row Show all	>Lus10019202 pacid=23141835 polypeptide=Lus10019202 locus=Lus10019202.g ID=Lus10019202.BGIv1.0 annot-version=v1.0 MKISSSSSSFTALLIVVFVTIATVTLLSRAPTSNLTAVVVANEIVPSIPIEGPSMNVIIVKESNIEPATKTVKRSDKYRRSNGKGDDQKRDGEAKHVVGG RKSMKFRSAVVADETSTASSSFKTSKHNYGNDARDLVAFTSDYRSPRHHPPKNN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	0	1
					Lus10022643 [exp]	4.9	0.8585
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	7.1	0.8606
AT3G05390			unknown protein		Lus10004494 [exp]	7.1	0.8764
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	10.5	0.8391
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	15.3	0.8403
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	18.3	0.8417
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10001732 [exp]	22.8	0.8423
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	26.5	0.8333
AT1G47980			unknown protein		Lus10037797 [exp]	27.6	0.8296
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	28.3	0.8578

Compare expression of checked genes

Lus10019202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.