Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 79 / 2e-16 F-box family protein (.1) AT3G56470 76 / 3e-15 F-box family protein (.1) AT4G00893 73 / 2e-14 unknown protein AT4G10695 63 / 2e-11 CDC68-related (.1) AT3G18720 62 / 7e-11 F-box family protein (.1) AT1G49360 61 / 4e-10 F-box family protein (.1) AT4G10660 60 / 4e-10 CDC68-related (.1) AT4G12382 56 / 1e-09 F-box family protein (.1.2) AT4G12370 53 / 8e-08 unknown protein AT2G33200 52 / 2e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024904 [exp] 219 / 7e-65 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10013738 [exp] 130 / 4e-35 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10021352 [exp] 94 / 2e-21 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 93 / 7e-21 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10004476 [exp] 91 / 3e-20 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10022706 [exp] 87 / 3e-19 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10029943 [exp] 87 / 8e-19 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10029926 [exp] 81 / 6e-18 AT1G57790 72 / 4e-15 F-box family protein (.1) Lus10014208 [exp] 83 / 1e-17 AT1G57790 286 / 2e-94 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079300 [exp] 87 / 3e-19 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.012G106800 [exp] 79 / 4e-16 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.006G212600 [exp] 71 / 1e-13 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.004G179685 [exp] 44 / 0.0001 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G228500 [exp] 44 / 0.0001 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G105100 [exp] 42 / 0.0005 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10019204 pacid=23141814 polypeptide=Lus10019204 locus=Lus10019204.g ID=Lus10019204.BGIv1.0 annot-version=v1.0 ATGACGAGTCTTAATCAACAGTATGAAAGGCGGCCGTGGTCCGATCTTCCTGACGAGATTCTACAATTAGTTTTGGAGAGATTATTCGGCAAGGACATTG CACGATTCAGAACGGTATGTACACATTGGAGATCGACTCCAACACCTCAAGTCAAGTGCATTGCCTCCCCGGTCTCAGACATCATCAAACATCCATTCTT GTTACGCTTTCATCGCAATTCATGCTTCCAGCTGTATTCACCGGCTTACAACAAACACTACCGTTTGGATGCTCCCCCGGTCATTAAGGAGAACACCGAA ATCCACTGTTCTAAGTATGGCTGGTTACTTCTGTCTCAAGGGGAACGCTTCTTGTTCTACAATCCATCTACCAACGACATCATCAAATTGCCCAACTTAA GGAATTGCTATGTATTTTCTTTCAACCGGATGAGCTTTTCTGCTCCACCCACATCCTCAGATTGTGTGGTTTTCGGCCTTGTGGATATGTTGGAACAACG GTTTGGATCTGTATATATATGCGTCCTCCGTCGGGGAGATACAGAGTGGAGAAACTACAATCGAACTCTAGGGTTTATCAGCTACACAAGGCTGGAACAC CACCACCACCGTACCCAGATCGACCTCTTGTCCTCCTCGAAGCAGAAGGTACTAAAAACCGTTAGAACTCGTTGCAGAGTAGCATCGATTCCTTGTAGCT GGGTGTTCGAATGCACTGTTTTCTTCTCGACGCCTGTTTTCCACAACGGGGCTTTCTACTGCATAGGACTGAACGGGATATTGGAGGTTTTCGAACCTCG GGCAAAGCAGAGGAAGAACATGTGGAGGGTGCTTAAGACCACCAAGCACAAGGCATTCACACGCGACGACAATAAGAATTGTAAAGCCTACCTCGCTGAG TCGTGCGATGGAGGCTGA
AA sequence Show only first row Show all	>Lus10019204 pacid=23141814 polypeptide=Lus10019204 locus=Lus10019204.g ID=Lus10019204.BGIv1.0 annot-version=v1.0 MTSLNQQYERRPWSDLPDEILQLVLERLFGKDIARFRTVCTHWRSTPTPQVKCIASPVSDIIKHPFLLRFHRNSCFQLYSPAYNKHYRLDAPPVIKENTE IHCSKYGWLLLSQGERFLFYNPSTNDIIKLPNLRNCYVFSFNRMSFSAPPTSSDCVVFGLVDMLEQRFGSVYICVLRRGDTEWRNYNRTLGFISYTRLEH HHHRTQIDLLSSSKQKVLKTVRTRCRVASIPCSWVFECTVFFSTPVFHNGAFYCIGLNGILEVFEPRAKQRKNMWRVLKTTKHKAFTRDDNKNCKAYLAE SCDGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	0	1
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	1.0	0.9552
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10005050 [exp]	2.0	0.8179
					Lus10003941 [exp]	8.1	0.7938
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	9.4	0.7938
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	10.5	0.7938
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	11.5	0.7938
					Lus10017294 [exp]	12.4	0.7938
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	13.3	0.7938
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	14.1	0.7938
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	14.8	0.7938

Compare expression of checked genes

Lus10019204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.