Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13610 258 / 2e-84 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 251 / 3e-81 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 249 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 239 / 4e-77 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 233 / 1e-74 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 227 / 1e-72 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G31020 214 / 5e-68 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 208 / 6e-66 alpha/beta-Hydrolases superfamily protein (.1) AT2G24320 205 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 192 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036842 [exp] 466 / 2e-165 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 255 / 9e-83 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 254 / 2e-82 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 237 / 3e-76 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 235 / 2e-75 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 234 / 1e-74 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10028497 [exp] 222 / 1e-70 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10042075 [exp] 216 / 1e-67 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000544 [exp] 213 / 2e-66 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136900 [exp] 308 / 9e-104 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 294 / 4e-98 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 251 / 6e-81 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G090800 [exp] 248 / 2e-80 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 248 / 3e-80 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 246 / 1e-79 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 246 / 2e-79 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 241 / 4e-78 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.017G117633 [exp] 241 / 7e-78 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 208 / 9e-66 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019205 pacid=23141725 polypeptide=Lus10019205 locus=Lus10019205.g ID=Lus10019205.BGIv1.0 annot-version=v1.0 ATGGGGACCGCATCGTCTTTTATGGCGTCGAAGTTCGCTTACTACCCGCCCAACCCGCCGTCGTACACAGTGTCGACCGATGAGGAGACGAGGAAGCTCC GGCTGGTCAGAGGCTACGACGACCACCGGCCGAGGGACGACGTGGACATGCTGAAATTAGCGACCGGAAGAGGGAACGAGATCGTGGCGATGCTTGTGAA AAACCCGTCGGCGACTCTGACCGTGCTTTACTCCCACGGCAACGCCACTGATATCTGCCGGAGTAACTGTGTCTTCACTGAGCTTAGCTCTCGTCTCAAC GTCAATCGCATGGGCTATGATTATTGGGGATATGGACAATCTTCTGGAAAGACTTGGTATGGGAAGGAGGAGGAAGACATAATCTTGTATGGACAGTCAC TTGGGAGTGGACCTACTCTTGAACTTGCTACCCATTTGCCCCTTAGGGCTGTTATCCTCCACTCACCTATCCTCTCCGGGCTCCGGGTCATGTATCAAGA AAACCTTTTTCTTCAACACATACAAGGGTTTGATTCAAAACTTTTAATTCGATGGTTAAAACGACGATCAAATTTTGTCTTCCTCCAAAACACAGAAGAT GATGTTATAGATATTTCGCATGGGGAAAAGTTGGAGAATATGTGCAAGGAGAAGTACGAGCCATCGTGGGTTGAGAAAAGGAACCATTGTAACTTGGAGA AATTCTCTCAGTACCTAACCCACCTAAGGAAGTTTGTCTCGGCCATCGAGAAGCTCCCTCCCCACATCCGGACGCTCACTAGCGTTGCAGAGGAGAAGGA GACAGAGAGTTGTGATACTACTCCTCATCGTCTGTCGGAACATCCATTGATCGTTCATGTAGGAGGAAGTCAGAGTTTAAAGAACTCTCGTTGTAAGGAG AAGTTTCCTGCCGGGAGGACGAACATGAATCACTAG
AA sequence Show only first row Show all	>Lus10019205 pacid=23141725 polypeptide=Lus10019205 locus=Lus10019205.g ID=Lus10019205.BGIv1.0 annot-version=v1.0 MGTASSFMASKFAYYPPNPPSYTVSTDEETRKLRLVRGYDDHRPRDDVDMLKLATGRGNEIVAMLVKNPSATLTVLYSHGNATDICRSNCVFTELSSRLN VNRMGYDYWGYGQSSGKTWYGKEEEDIILYGQSLGSGPTLELATHLPLRAVILHSPILSGLRVMYQENLFLQHIQGFDSKLLIRWLKRRSNFVFLQNTED DVIDISHGEKLENMCKEKYEPSWVEKRNHCNLEKFSQYLTHLRKFVSAIEKLPPHIRTLTSVAEEKETESCDTTPHRLSEHPLIVHVGGSQSLKNSRCKE KFPAGRTNMNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	0	1
					Lus10005604 [exp]	1.7	0.9168
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	2.0	0.9112
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	2.2	0.9517
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	5.7	0.9185
					Lus10003428 [exp]	8.8	0.9039
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	9.4	0.8794
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	10.4	0.9056
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	19.0	0.9072
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10021399 [exp]	19.7	0.7881
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	22.3	0.8884

Compare expression of checked genes

Lus10019205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.