Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68990 55 / 1e-08 MGP3 male gametophyte defective 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036844 [exp] 263 / 2e-81 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10034355 [exp] 43 / 0.0001 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 43 / 0.0001 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 42 / 0.0003 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 42 / 0.0003 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112800 [exp] 99 / 1e-23 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.010G136700 [exp] 75 / 3e-15 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.004G111600 [exp] 46 / 1e-05 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019207 pacid=23141741 polypeptide=Lus10019207 locus=Lus10019207.g ID=Lus10019207.BGIv1.0 annot-version=v1.0 ATGACAAAAAACCCTGCACTAGTCTTCAGTTCATTACGGTCCACCCGGCTTACCGACCCGAACCGACCCACTTGTTTATCCAACCGAAGCCAGATCTCTA CTCCTTCTTCAATCTTCCCTACCCTAGGTTTTAAGGGAGGGTTTAAAGACGGCTCCTTTGCAACTGCCTCTGTTTTCCCAGCCTCAGCTGAATCTTCTTC CGCTGTCATGTGGAGGACCGTCGCCAGACGAGTTTCCGCTTCGAAGCGGCTCAAATTCCCTCCAAATACCACCACCAAGTCTACCGATTCCAACTTTCTC GACCGAATCAGACCGCCAGAGCTCTCTTCATCCGCCGGATTGCGTCGAGTTTGCTCCTCCTCCTCCGCCGTCGTTCAGAATTGGAAGCTGAGTACCTTCG CAATCACTAAATCTGTGCATCGATTTGCGACTTCGGCTGCAGCGGCGCAGGTGGTTTCCACGACGGACGAGTCTGACCTCTCCGGGTCGGACGAGCTGCA GGATTTGGTGGAGCGATTCAACGGTAAGCACTTGCAGAAGGATCAGAACCAGGAGGAGGAGGAAAAGAAGAGAACGGAGTTCACAAATAAAAAACGGGGG TCGAAGCCGAAGCAGATGGTGGCCGGGATGGGCATAGGGAAGTACTCGACGCTGAAGAAGAGGCAAGTGAAGATGGAGACCGAGGCGTGGGAGGAGGCGG CGAGGAGTATCAGGAGCTGTTGA
AA sequence Show only first row Show all	>Lus10019207 pacid=23141741 polypeptide=Lus10019207 locus=Lus10019207.g ID=Lus10019207.BGIv1.0 annot-version=v1.0 MTKNPALVFSSLRSTRLTDPNRPTCLSNRSQISTPSSIFPTLGFKGGFKDGSFATASVFPASAESSSAVMWRTVARRVSASKRLKFPPNTTTKSTDSNFL DRIRPPELSSSAGLRRVCSSSSAVVQNWKLSTFAITKSVHRFATSAAAAQVVSTTDESDLSGSDELQDLVERFNGKHLQKDQNQEEEEKKRTEFTNKKRG SKPKQMVAGMGIGKYSTLKKRQVKMETEAWEEAARSIRSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	0	1
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	3.9	0.9438
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	4.2	0.9404
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	4.7	0.9219
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	5.3	0.9036
AT1G27595			unknown protein		Lus10007230 [exp]	5.5	0.9297
AT4G30150			unknown protein		Lus10007572 [exp]	6.3	0.9298
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	6.5	0.9339
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Lus10012783 [exp]	7.5	0.8822
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	9.5	0.9234
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	11.3	0.9169

Compare expression of checked genes

Lus10019207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.