Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68990 1194 / 0 MGP3 male gametophyte defective 3 (.1.2) AT5G15700 1149 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT2G24120 1057 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036844 [exp] 1479 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10005097 [exp] 1160 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1152 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1149 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1149 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10022181 [exp] 1031 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 642 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 373 / 3e-123 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136700 [exp] 1337 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1334 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.004G111600 [exp] 1211 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.017G105801 [exp] 1185 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.018G103300 [exp] 1097 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1089 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10019208 pacid=23141812 polypeptide=Lus10019208 locus=Lus10019208.g ID=Lus10019208.BGIv1.0 annot-version=v1.0 ATGTGCGAGCAGAAACTAGCTCCCAATTTGCCATACGTGAAGACTTTGTTCCTTGGGTGGTTTGAGCCCTTGAGGAATGCGATTCTGGCGGATCAGGAAG CTTGCAGGCAGAAGAACAGTAAGGTTTCTTATGGACCGTATTTCAATGAGCTGCCAGCTGATATGATGGCTGTTATCACCATGCATAAGTTGATGGCGTT GTTGATGACTACTAATGGAGCTAATGGGAGTGTTAGGGTCGTTCAGGCTTCCTCTGCTATTGGTGAAGCGATTGAGCATGAGGCGATGATTAACAAGTTC TTGGAGAAGACAAAGAAGAAGAAGAGCAGAAAGCCAGGCCAACCGGAAGATGAGCCAGGTGTTGCTGCTATGATGGAGGCGGAAACGGAGGAGAAACCGG TTGAAGACAGCGACAGACTGAGGAAAAAAGTAACTACAATGATTAAAAAGCAGAAGCTTCATCAAGTGAGGAAAGTTGTGAAGGATCATGATGATTGGTC GCCATGGGGTCAGGATGCACATGTTAAGGTTGGCTGTCGATTGATACAATTGCTGATCGAAACAGCCTATATCCAACCCCCCGTTGATCAGTTAGGAGAT GATCCACCTGATATTCGACCGGCATTTGTGCACACCCTTAGGACTGTCACCCTTGACGCTCAGAACACCTGTAGGAGATATGGAGTAATTGAGTGTGACC CTCTAGTTCGTAAAGGCCTTGAGAAATCGGCGAGGCATATGGTCATCCCTTACATGCCAATGTTGATTCCTCCACTGGACTGGATAGGATACGACAAAGG TGCACATTTCTTTTTGCCTTCTTATGTTATGAGAATCCATGGGTCGAAACAACAACGGCAAGTGCTTAAGTGGACTTCAAAGGAACAATTGCGCCCTGTC TTTGAGGCCCTTAATACATTAGGAAACACCAAGTGGAGAGTGAACAAAAGGGTACTAGCCGTAGTTGATAGAATATGGGCAAGTGGAGGCCGTGTTGCTG GCTTGGTCGACCGTGAAGATATACCTCTACCCGAGAAGATAGAAACAGAAGATGAGGCAGAAATGCGGAAGTGGAAGTGGAAAATGAAAAGTATAAAAAA GGAGAACAGCGAGAGTCATTCACAACGATGTGATATAGAACTTAAACTTGCTGTGGCTCGTAAAATGAAGGACGAGGAAGGCTTCTACTACCCTCACAAC CTTGATTTCAGAGGACGTGCTTATCCCATGCACCCACATCTGAATCATCTTGGTTCTGATCTGTGCCGGGGTATCTTGGAGTTCGCTGAGGGGAAGCCTC TTGGGAAGTCTGGCTTACGGTGGCTGAAGATACATTTGGCAAATGTGTATGCTGGCGGCGTGGACAAGTTTTCATATGATGGGAGGATAGCATTTACTGA AAACCATCTAGAGGATATTTTTGACTCTGCTGAGCAACCGCTTGAAGGAAAGCGATGGTGGTTGGGAGCAGAGGATCCGTTCCAATGCTTAGCCACATGC ATCAATCTCACAGAAGCATTGAGAAGTTCCTCCCCAGAGACCACCTTATCGCACATGCCTGTCCACCAGGATGGCTCGTGTAATGGCTTACAACATTATG CTGCCCTTGGAAGGGACAAGTTAGGAGCAGCTGCAGTCAATCTAGTTGCTGGTGAAAAACCTGCTGACGTTTACTCAGGAATTGCTACTCGGGTTCTTGA AATCATGCGAGCCGATGCGGAGAAAAACCCGACAACGTATCCATATGCCAAGCTTCTGATTGATCAGGTTGACCGGAAATTAGTTAAACAGACGGTGATG ACATCAGTATATGGCGTCACTTACATTGGTGCTCGTGACCAAATAAAGAAGAGGTTAAAAGAGCGTGGTGGAATAGAGGACAATGGAGTTCTGTATCTGG CGGCTTGTTATGCAGCAAAAACTACCCTGATTGCTCTGGAGGAGATGTTTGAAGGGGCAAGAAGTATCATGGCATGGCTTGGTGAATGTGCCAAGATAAT TGCCTCGGAGAATCAGCCTGTACAATGGGTCACCCCTCTTGGACTCCCTGTGATACAGCCTTATCGACAACTCGGTAGGCATCTGATCAAGACATCCCTT CAGATGCTGGCCCTGCAAAGAGAAACTGACAAGATAATGACGAAGCGGCAAAGAACTGCGTTCCCTCCGAATTTTGTTCACTCCCTTGATGGTTCTCATA TGATGATGACTGCCGTTGCCTGCAGAAATTCTGGTTTGAGCTTTGCAGGTGTCCACGATTCTTATTGGACTCATGCGTCCGATGTTGATGAAATGAACAG AATACTCAGAGAAAAGTTCGTCGAACTTTACGAGGCCCCTATTCTCGAGAATTTGTTGTTGAGCTTTCAGAAGTCATTCCCTAAATTGAAGTTTCCTCCA CTTCCGGATAGAGGAGACTTTGATCTGAAAGATGTCTTGAGATCTCCCTATTTCTTCAATTAA
AA sequence Show only first row Show all	>Lus10019208 pacid=23141812 polypeptide=Lus10019208 locus=Lus10019208.g ID=Lus10019208.BGIv1.0 annot-version=v1.0 MCEQKLAPNLPYVKTLFLGWFEPLRNAILADQEACRQKNSKVSYGPYFNELPADMMAVITMHKLMALLMTTNGANGSVRVVQASSAIGEAIEHEAMINKF LEKTKKKKSRKPGQPEDEPGVAAMMEAETEEKPVEDSDRLRKKVTTMIKKQKLHQVRKVVKDHDDWSPWGQDAHVKVGCRLIQLLIETAYIQPPVDQLGD DPPDIRPAFVHTLRTVTLDAQNTCRRYGVIECDPLVRKGLEKSARHMVIPYMPMLIPPLDWIGYDKGAHFFLPSYVMRIHGSKQQRQVLKWTSKEQLRPV FEALNTLGNTKWRVNKRVLAVVDRIWASGGRVAGLVDREDIPLPEKIETEDEAEMRKWKWKMKSIKKENSESHSQRCDIELKLAVARKMKDEEGFYYPHN LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGKPLGKSGLRWLKIHLANVYAGGVDKFSYDGRIAFTENHLEDIFDSAEQPLEGKRWWLGAEDPFQCLATC INLTEALRSSSPETTLSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIATRVLEIMRADAEKNPTTYPYAKLLIDQVDRKLVKQTVM TSVYGVTYIGARDQIKKRLKERGGIEDNGVLYLAACYAAKTTLIALEEMFEGARSIMAWLGECAKIIASENQPVQWVTPLGLPVIQPYRQLGRHLIKTSL QMLALQRETDKIMTKRQRTAFPPNFVHSLDGSHMMMTAVACRNSGLSFAGVHDSYWTHASDVDEMNRILREKFVELYEAPILENLLLSFQKSFPKLKFPP LPDRGDFDLKDVLRSPYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019208 [exp]	0	1
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	1.4	0.9424
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	3.2	0.9422
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Lus10026157 [exp]	3.5	0.9401
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	5.0	0.9362
AT1G69070			unknown protein		Lus10019174 [exp]	9.5	0.9415
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	12.0	0.9356
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	12.4	0.9280
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	16.2	0.9180
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	16.2	0.9236
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	16.9	0.9245

Compare expression of checked genes

Lus10019208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.