Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21390 46 / 7e-06 EMB2170 embryo defective 2170 (.1) AT1G76980 44 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004311 [exp] 409 / 5e-146 AT1G21390 47 / 3e-06 embryo defective 2170 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064700 [exp] 65 / 3e-12 AT1G76980 70 / 7e-14 unknown protein Potri.007G104500 [exp] 56 / 5e-09 AT1G76980 70 / 6e-14 unknown protein Potri.005G185200 [exp] 50 / 4e-07 AT1G76980 134 / 1e-37 unknown protein Potri.002G075400 [exp] 47 / 6e-06 AT1G76980 141 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019210 pacid=23141305 polypeptide=Lus10019210 locus=Lus10019210.g ID=Lus10019210.BGIv1.0 annot-version=v1.0 ATGCCTACTCCCCAAACTCTCTTCTCTTCTCCCATCCCGTCGCGCAACACCGTCCATCTCGACAACGATGATCCTCGCGAATTCGACTTCTGGGCCACGG CCGAAGCCAGGTATTTCCAGAGCTTGAGGCAGAGTAGGCTCGACCGAGGTTCAACAGCGGCAGGAGCATCGTCCCCTTGCCATAAGCGAACGGTTTCCTC TCAATCTTATCTCCAATCCCTCGCAGAAGGGAGGAAGGCGATGATGAAGATGGTCGGAGACATGCCCGACTCTTGCTTCGAACTCTCCCTCAAGGACATC GTCAACGAGGTCCAGGGCCAACGGATCGAGGAGGAAGAAGATCTGAAAGATGGGAGCTTCCAGTTCGAAACAGAGGATCAGATGAAGAAACAGAGCTGGC TGAAGAAGATGATAGCGAAGAACAAGGAGAGTACCAGTACTCTCTCTAAGCCGCCGTTGTACGGTAGGGTTCCGAGGAGCTGTAGTTTGGATACAGGCAC CGTGTTCATCAAGGTATTCAATCTTGCTCCTCTTAGCTGGAAAGCCAACAGAAATGGGAAGAAAATACAGGCGAAAACAGGGGAAATCCATGGTACTGTG AGGAGCGATAGCCATGGAAGCTCTAGTGCTAGCAGTAGTAGAAGCTCGAGCAGCGGTAGTAGCGGTTGCAGCTCCGACGGTTCAACCAGGGGACTAAGAA GACAGAGGAGGGTTCTGGAAGCCATGGTTGGCTGCTTCCCATCGTTTTGCATGGGAACACAAAAGAGCAAGCTACGTGATTAA
AA sequence Show only first row Show all	>Lus10019210 pacid=23141305 polypeptide=Lus10019210 locus=Lus10019210.g ID=Lus10019210.BGIv1.0 annot-version=v1.0 MPTPQTLFSSPIPSRNTVHLDNDDPREFDFWATAEARYFQSLRQSRLDRGSTAAGASSPCHKRTVSSQSYLQSLAEGRKAMMKMVGDMPDSCFELSLKDI VNEVQGQRIEEEEDLKDGSFQFETEDQMKKQSWLKKMIAKNKESTSTLSKPPLYGRVPRSCSLDTGTVFIKVFNLAPLSWKANRNGKKIQAKTGEIHGTV RSDSHGSSSASSSRSSSSGSSGCSSDGSTRGLRRQRRVLEAMVGCFPSFCMGTQKSKLRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10019210 [exp]	0	1
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	5.2	0.9370
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	10.2	0.9163
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	14.7	0.9230
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	19.4	0.9237
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	21.1	0.9222
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	25.5	0.9132
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	25.6	0.9155
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	26.3	0.9163
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	27.7	0.9109
					Lus10010608 [exp]	29.0	0.9044

Compare expression of checked genes

Lus10019210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.