Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004306 [exp] 441 / 9e-155 ND / Lus10004308 [exp] 356 / 1e-121 ND / Lus10016424 [exp] 264 / 3e-83 ND / Lus10019690 [exp] 232 / 5e-71 ND / Lus10019212 [exp] 215 / 4e-64 ND / Lus10019691 [exp] 208 / 6e-62 ND / Lus10042237 [exp] 203 / 2e-58 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10004305 [exp] 202 / 2e-58 ND / Lus10000479 [exp] 196 / 2e-56 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019211 pacid=23141380 polypeptide=Lus10019211 locus=Lus10019211.g ID=Lus10019211.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTTGATTTCAAGTCTAACAACCACTTTGTTGCATCCTCAGACGGAGCCAACCTCCAAATCTACGAGTTAACCAACCACACCGTTAACCTTC CTTTGATAAAAAAGATTCACTGGAAGAAAGTTGCCACCATTCAAACAAGCCATGACGAAGATGATGATAATGACGACGAGATGTCATATAACGGGCTTAT ATTCTTCGACGGTCATGGAAGGATCGAGGAAGAAGAGGAGTTCACTATGCTTGCTCAACACCTCAAGGACTTGCACTTGCTAGTGAGTCCCGAAGGGTAT TGCTTCCAGGAAGTATCTGATCTTGGAGTGTACTCTGATTATGGGATTGACTATCTCCGGCTGAACGATCTGTTCAGCTGGCCTCGTTACAGGGTCGAAC TTGCGACGACCAACGTGTGGAGCCGGTCGGAGTTGAAGTACCACCTTCCTAGGCACAAGAAGCATTCTGAGCCGGCGATAGGTGGTGCGGTGATCAGTAA GGAAAAGTACGAGGAGTTGAAAAGGTCGGTCAAAGAGAAAGATGAGGAACTAGAGAAGCTCAAAGAACTTAAAAAGAAGAAGGACGATGAAGAGGCGAAA ACAAAGAGGAGGATAGAAGAACTGGAGAAGGCAAATAAAGCTAAAGATGAAGAACTGAAGGAATGTGGAAGGAAGTCATGGGCGATTCTACCTTCCACCA AGTTCCTACCGCAAAGCTTGGAAGCCAAAGATAAGTACTTAGCCACGAGACGACGGGTTCCACCAGGAACATTCACATGTTATTCTCAGTGGGGGTTTCC TTACGTGAGTAACTCACAAAAACTAGTGGATAAAATGATGGTTATGAGCAACTATGGTGTTAGGGTTGTTGAGGAGGAAAACAGTCTCACTGAATGGCCA CCTCTACCAACAATCAGAGTATGTCTCGAAGATTTCGACAAGAACAACTGGTGGTATTTGAAAACAACCCACCCTGAAGGGGGCTTAACGATGCTGGTGT ATTACGAAGGAAATCGATCTCATATTTCTCATAGTGGTTACGGCGGCATTGATCCTATTATTCCCTTGCCGTTTCCTAAGGGTATTCTTGAGGTCTACTC GTACTATCCTACGTTCTCCCTCTTTAGGCTGGAACCATTTGGAGTGAGATTTGGTTTCGCATACCGGGCCTAG
AA sequence Show only first row Show all	>Lus10019211 pacid=23141380 polypeptide=Lus10019211 locus=Lus10019211.g ID=Lus10019211.BGIv1.0 annot-version=v1.0 MALFDFKSNNHFVASSDGANLQIYELTNHTVNLPLIKKIHWKKVATIQTSHDEDDDNDDEMSYNGLIFFDGHGRIEEEEEFTMLAQHLKDLHLLVSPEGY CFQEVSDLGVYSDYGIDYLRLNDLFSWPRYRVELATTNVWSRSELKYHLPRHKKHSEPAIGGAVISKEKYEELKRSVKEKDEELEKLKELKKKKDDEEAK TKRRIEELEKANKAKDEELKECGRKSWAILPSTKFLPQSLEAKDKYLATRRRVPPGTFTCYSQWGFPYVSNSQKLVDKMMVMSNYGVRVVEEENSLTEWP PLPTIRVCLEDFDKNNWWYLKTTHPEGGLTMLVYYEGNRSHISHSGYGGIDPIIPLPFPKGILEVYSYYPTFSLFRLEPFGVRFGFAYRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019211 [exp]	0	1
					Lus10039365 [exp]	2.4	0.7907
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	8.5	0.7974
AT5G10420			MATE efflux family protein (.1...		Lus10015904 [exp]	21.7	0.7508
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10041898 [exp]	47.2	0.7353
					Lus10013985 [exp]	52.8	0.7387
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	55.6	0.7176
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10039112 [exp]	60.8	0.6692
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	62.4	0.7217
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	63.7	0.7322
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	68.0	0.7225

Compare expression of checked genes

Lus10019211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.