Plant FIBer expression Database

Lus10019212 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004305
[exp]
443 / 4e-148 ND /
Lus10016424
[exp]
270 / 8e-83 ND /
Lus10019690
[exp]
241 / 2e-72 ND /
Lus10004308
[exp]
227 / 5e-69 ND /
Lus10019691
[exp]
229 / 1e-67 ND /
Lus10019211
[exp]
213 / 3e-63 ND /
Lus10000478
[exp]
219 / 1e-62 ND 41 / 0.004
Lus10000479
[exp]
218 / 2e-62 ND /
Lus10004306
[exp]
141 / 7e-37 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10019212 pacid=23141383 polypeptide=Lus10019212 locus=Lus10019212.g ID=Lus10019212.BGIv1.0 annot-version=v1.0
ATGCAGAAGGCTGATTGGAAGAAAGTTGCCACCATTCCTAAACAAGATGATGTTGATGATGATGCAGCATATGATGGGCTTCTGTTCTTCAATAGTCATG
AAAGAATCGAGGAACCAGAAGTGCTGACTATGCTTGCCGAGCACCTGAAGGAGTTACGCTTGCTGGCGAGTCCAGAAGGGTATTGTTTCCAACGAGTATC
CGAATTTGGTGTTCACTATCTTCGACTGAACGATCTGTTCAGCTGGCCTCGCTACGGGGTCAAACTTGTGACGATCAGCACGTGGAGCAGGTTGGAGCTT
AAGTTGTTGAAGGACGACGACGACCATTATGATTTGGAGGAGGAGGCAAATAAGTCCAAGGACAACAAGGATGACAAGGACGAATTGCGAAAGTCAGCCA
AGTGGACAAATATCAATGTCGTAGTTTGGGAGCTGCAGAGACAACTAAGGAAGAAGGATGTTGAGTTGCGGATGCTTAAAAGGAAGAAGAACGAGGAGGA
CAAAGTGAAAGAAGAAAGGATACAAGAACTAGAAAAGCTTAACGAGGCTCTAGAGGAGGTAAATGAAACCAAGGATGAGGAATTACAAAAGTTAGCCGCC
TACTCGAAGAACATGATCAGCGACCTGCAAAGACAATTGAAAAGGAAAGATGACCAACTAGAGATGCTCAAGAAGATGAAAGTTGCGGAGGAAGAGGCGG
GTGAAAAAAGAATTGCCGAGCTAGAGAAGCAGAATGAGGATTTGGAAGAAGCAAAAAGAACAAAGGATAAGGAATTACAAAAGCTACAGAAGCAGTTGAA
GAAGAAGGACGGCGAACTACATGCGCTCAAGAAGAAGGCAGAGGAGAAATCAAATAGGATAGAAGAACTAGAGAAGATGTTCGAGGAATTGGAGGAGGAG
AATATGCGTATAAAGGAGGCGAAGGAGGACGAAGTTTCGAAGCTAAAGAAGGCGGAGAGTGAGTTGCGGAAGCTGTTGAAACTGAAAGAGAATGAATTAC
AAACATTGAGAAAGAAGAAACAAGACGACGAAGAAGCCAAACTGTCAAAGTTAAGAGAAGAATTGGAGGCCAGAAAGAATACTGAAGTGGAAAAGCTAAG
GAAGGAGAAGGATGATGCGGTTTCGAAGATACTACAAGAGAAGAATGATGAAGCAGCAAAAACCAGAAAGGTGGAGGGGGAGTTGAAAGAAGCAAGGGAG
AAACTAAGTTCCAGTGTAGCTGAAGTGGCAGAGGTGAAGAGAGAATTGGAGAAATGTCAAAGGAATTCGTGGGCCTTTCTACTTTCGACCAAGTTCATTA
AACCGGAAAACTTAGATTTCAAAGATAAGTATTTGGCCACAAGACAGAGGGTTCCTCTAGGAACATTCGTGTGTGCTTCTCGATTACAAAACAATTCGGT
GAGTAACTCACCTAAACTGGTGGATAAAATGCCAATTGACGAAAACTGCATAGTTTGGTTGGTTGACGAGGAAAGAAGCAGTCGTGCTGAATGGCCACGT
CTACCACTAATCTTTGTATATCTTGGTACCGACGGTTCAGAATTCGACCAGAACAACTGGTGGTATTTGAAAACCACCCATCCCGAAGGTGGCTTGACGA
TGCTAGTATATTATGAAGGAGATCGTTCTCAAATTTCTATAACTAGTTTCGGCGGAAACTTCATCACGTTGCCGTTTCCCAAGGATCTTGAGCTTTATTC
GTGGTATTCGAGGTTTTCCATCTTTAGGCTAGAACCATTTGGAGTAAGATTCGGTTTCACGTACCGGTACTAA
AA sequence
>Lus10019212 pacid=23141383 polypeptide=Lus10019212 locus=Lus10019212.g ID=Lus10019212.BGIv1.0 annot-version=v1.0
MQKADWKKVATIPKQDDVDDDAAYDGLLFFNSHERIEEPEVLTMLAEHLKELRLLASPEGYCFQRVSEFGVHYLRLNDLFSWPRYGVKLVTISTWSRLEL
KLLKDDDDHYDLEEEANKSKDNKDDKDELRKSAKWTNINVVVWELQRQLRKKDVELRMLKRKKNEEDKVKEERIQELEKLNEALEEVNETKDEELQKLAA
YSKNMISDLQRQLKRKDDQLEMLKKMKVAEEEAGEKRIAELEKQNEDLEEAKRTKDKELQKLQKQLKKKDGELHALKKKAEEKSNRIEELEKMFEELEEE
NMRIKEAKEDEVSKLKKAESELRKLLKLKENELQTLRKKKQDDEEAKLSKLREELEARKNTEVEKLRKEKDDAVSKILQEKNDEAAKTRKVEGELKEARE
KLSSSVAEVAEVKRELEKCQRNSWAFLLSTKFIKPENLDFKDKYLATRQRVPLGTFVCASRLQNNSVSNSPKLVDKMPIDENCIVWLVDEERSSRAEWPR
LPLIFVYLGTDGSEFDQNNWWYLKTTHPEGGLTMLVYYEGDRSQISITSFGGNFITLPFPKDLELYSWYSRFSIFRLEPFGVRFGFTYRY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10019212
[exp]
0 1
AT5G37450 Leucine-rich repeat protein ki... Lus10002278
[exp]
10.7 0.8651
AT4G27435 Protein of unknown function (D... Lus10032663
[exp]
12.7 0.8617
AT3G09270 ATGSTU8 glutathione S-transferase TAU ... Lus10017208
[exp]
20.0 0.8630
AT5G05340 Peroxidase superfamily protein... Lus10034207
[exp]
29.1 0.8594
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Lus10000676
[exp]
44.0 0.8254
AT2G16790 P-loop containing nucleoside t... Lus10037373
[exp]
50.6 0.8091
AT5G53130 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNE... Lus10014925
[exp]
62.4 0.8207
AT1G06520 ATGPAT1, GPAT1 glycerol-3-phosphate acyltrans... Lus10007344
[exp]
66.2 0.8110
AT2G37430 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers sup... Lus10030330
[exp]
67.9 0.8225
AT1G49050 Eukaryotic aspartyl protease f... Lus10042982
[exp]
69.1 0.8242

Lus10019212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.