Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21090 327 / 3e-104 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G37170 305 / 8e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 303 / 4e-93 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 299 / 4e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 300 / 3e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 291 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 293 / 6e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 285 / 3e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 283 / 3e-86 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 280 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003382 [exp] 488 / 3e-172 AT4G16835 212 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004303 [exp] 330 / 2e-110 AT2G21090 146 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003383 [exp] 320 / 7e-107 AT2G21090 145 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004304 [exp] 305 / 2e-101 AT1G11290 123 / 2e-32 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 310 / 2e-96 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 297 / 2e-92 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003324 [exp] 295 / 2e-92 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022629 [exp] 297 / 3e-92 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036921 [exp] 297 / 8e-92 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091600 [exp] 332 / 4e-105 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 317 / 3e-99 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 316 / 5e-98 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 300 / 7e-93 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 301 / 1e-92 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 299 / 1e-92 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G038400 [exp] 297 / 1e-92 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 296 / 2e-92 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 294 / 1e-90 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 293 / 2e-90 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10019213 pacid=23141349 polypeptide=Lus10019213 locus=Lus10019213.g ID=Lus10019213.BGIv1.0 annot-version=v1.0 ATGGTTTCAATGGATCCCGCCACAGTAATCGAGGAATACGGTACTCTCCTATCGAGATGCATCACATCCAGGAACCTCAAACTGGGCAAAGCCATTCATT CCAACCTCATCAAGACCGCGTTCAACCTCACCGCGATCAACTTCAACTCCTTCGTCGTTAATCGTCTAATCGACATGTACTCCAAATGCAGTTCTATCGG ATCCGCCCATAAGGCCTTCGACGATCTCCCCTTCAAGAACGCTCGTTCCTGGAACACCATTGTCTCCGCCTGCTCCAAATTGGGTATGATGAAAATTGGG CGCAAACTATTCGATGAAATGCCTGAACGAAATCTCGTCAGCTACAACTCAATGATTTCGGGGCTTTCTCGTGGTGGGTGTTACACGGAGGCGTTGGGTA TGTTCATGAGGTTGCAGGAAGATTGCGTTGGTGGGTTTTGTTTGGATGAGTTTACTGTTGTGAGTGTGGTGAGTTGTTGTGCGAGCTGTCGTGGGTTGGG ATTGGTTCGTCAGCTGCATGGTGTGGGATTAGTTGTTGGGTTGGAAGGGAATGTGGTGTTGCTGAACTCTGTGGTTGATGCTTATGGGAAATGTGGGGAA CCTGATGTTAGTTTCCGTGTATTTAGCAGGATGAATGAAAAGGATGTTGTGTCGTGGACGTCGATGGTGGCTGCTTATACTCGAGCATCCAGGCTGGATG ATGCTATTGGTCTCTTTAAACAGATGCCACATAGGAACACTATTGCTTGGACTAGCTTGATGGCTGGTTTCGCACAAAATGGCCAGAGTGAAAGAACATT GGATCTCTTTAAGCAAATGTTGGAGGATGAAGTTAAGCCGAGTGGTTTTACGTTTGTAACTCTTCTTAGTGCATGTGCCGATCTAGCACTGTTGGATAAA GGTAAGCAGATTCATGGCCACATTGTCAAGAGTGAGGATTTTCGTAGTAGTGTCTATGCAAATAACGCGCTACTCGACATGTACTGCAAATGCGGTGATA TGGGATCTTCCAAGAGATTGTTCGAAGGAATGGTAATGAAGGATGTTGTGTCCTGGAACTCAATGATTACTGGATTTGCACATAACGGGCTTGCAGATGA ATCTCTTGTGATCTTCAGAGAGATGGTTCAGGGAAAGAATACAATGCCAAATCATGTGACCTTTCTTTGTGTCTTATCTGCTTGTAGCCACACAGGATCA CTTTCTGAAGCACTTGGTGTCCTAGAGCAGATGGAAAATAGGTATCATATTTGCCCAAGATCAGAACATTATGCAATCTTGATTGATTTATTAGGTAGGA AAAACAGACTGAGCGAGGCGATGGAGTTAGTAGAAAAAACTCCTGGTCTATCGGAGCATGCGGGGATATGGGGCGCTGTATTAGGTTCTTGTCGAATCCA TCACAATGTGGGTCTTGCCATGAAAGCTGCGGAAACTCTATTCAAATTAGAACCCGGAAATCCTGGAAGATATGCCATGTTAGCGAATGTTTATACATCA GCTAATAAATGGAGTGATGCTTCAAGAATGAGAAGGGAAGTGGATGAAAAAGGTCTAGTTAAAGATGTAGCTTACAGTAGGATTGAGGTGAGGAATGAGA GGCATGAGTTTGTGGCTAAAGACGAGGCTCACAGACAGATACAAGAAATATATGAAGCAATCGCTCAACTACTTGATCATATGAGGGAAGCTGGACACTG GCCTTCCACAAATGACTTTGAATTGTCGGAGAAGATGATGTCGTAG
AA sequence Show only first row Show all	>Lus10019213 pacid=23141349 polypeptide=Lus10019213 locus=Lus10019213.g ID=Lus10019213.BGIv1.0 annot-version=v1.0 MVSMDPATVIEEYGTLLSRCITSRNLKLGKAIHSNLIKTAFNLTAINFNSFVVNRLIDMYSKCSSIGSAHKAFDDLPFKNARSWNTIVSACSKLGMMKIG RKLFDEMPERNLVSYNSMISGLSRGGCYTEALGMFMRLQEDCVGGFCLDEFTVVSVVSCCASCRGLGLVRQLHGVGLVVGLEGNVVLLNSVVDAYGKCGE PDVSFRVFSRMNEKDVVSWTSMVAAYTRASRLDDAIGLFKQMPHRNTIAWTSLMAGFAQNGQSERTLDLFKQMLEDEVKPSGFTFVTLLSACADLALLDK GKQIHGHIVKSEDFRSSVYANNALLDMYCKCGDMGSSKRLFEGMVMKDVVSWNSMITGFAHNGLADESLVIFREMVQGKNTMPNHVTFLCVLSACSHTGS LSEALGVLEQMENRYHICPRSEHYAILIDLLGRKNRLSEAMELVEKTPGLSEHAGIWGAVLGSCRIHHNVGLAMKAAETLFKLEPGNPGRYAMLANVYTS ANKWSDASRMRREVDEKGLVKDVAYSRIEVRNERHEFVAKDEAHRQIQEIYEAIAQLLDHMREAGHWPSTNDFELSEKMMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	1.0	0.8810
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	2.4	0.8769
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	3.0	0.8319
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	3.7	0.8051
AT3G49990			unknown protein		Lus10015447 [exp]	3.9	0.8625
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	3.9	0.8691
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	4.0	0.8647
AT2G33640			DHHC-type zinc finger family p...		Lus10025157 [exp]	4.7	0.7972
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	4.9	0.8463
AT5G08680			ATP synthase alpha/beta family...		Lus10024114 [exp]	6.2	0.7748

Compare expression of checked genes

Lus10019213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.