Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23570 483 / 9e-167 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT3G22430 59 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004302 [exp] 820 / 0 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10011024 [exp] 420 / 1e-135 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Lus10026697 [exp] 199 / 5e-62 AT5G23570 110 / 2e-28 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10041203 [exp] 73 / 5e-15 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 47 / 4e-06 AT3G22430 125 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G137400 [exp] 574 / 0 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 573 / 0 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 434 / 2e-147 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 335 / 5e-109 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 275 / 2e-82 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187900 [exp] 251 / 1e-76 AT5G23570 228 / 7e-66 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 237 / 4e-73 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188100 [exp] 240 / 3e-72 AT5G23570 225 / 1e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 225 / 9e-68 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188200 [exp] 224 / 1e-67 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10019214 pacid=23141302 polypeptide=Lus10019214 locus=Lus10019214.g ID=Lus10019214.BGIv1.0 annot-version=v1.0 ATGAGCGAAGAGTTTGATTCTGATGACAGTCAGAAGAGCCACGACACCCGTAAGAAGAGCAGGTGGTTTAAGAAGTTTTTTGATTTGCTGGACAGCCTTA CTCTTGACCAAATCAATGAACCGGACAGACAGTGGCACTGTGCCGCATGCCAAAATGGTCCTGGTGCGATTGACTGGTTCAAAGGCCTGCAGCCGTTGAT CACACATGCCAGGACAAAAGGAGCGAAACGAGTAAAGCTACACAGGGAGCTTGCTGAACTACTGGAGGAGGAGATGTTCAGGAAGGGAACTTCCGTTTTC CCGTCTGGGGAAGTTTATGGCCAATGGAGAGGGTTGACGGAGGAGGAGAACGATTACGATGTAGTTTGGCCTCCTATGGTCGTGGTGATGAATACACGGC TCGACAAGGATGACAACGATAAGTGGACTGGCATGGGCAACCAAGAGCTGCTTGAGTATTTCAGAGCTTATGATGCAGTTAAGGCAAAACACGCGTATGG CCCACAAGGCCACCGTGGCATGAGTCTTCTGATATTCGAGGCCTCATCAAGGGGTTTTTTCGAAGCTACGCGATTGAATACCCACTTCACCAACCAGGGA ACCGACAGGAATGCTTGGAATCAGAAGTGGAACTCGTACAAAACTGGCGGGAAAAGGCAGCTCTATGGTTTCATAGCCACCCAAGAAGATGTCGATCTTT TCAATCAACATTCTCACGGCAAGGCGAAGCTCAGATATGAGATGCGATCATACAACGAGGTGGTCGTTCGAGACTACAACAGGGTCTGCAATGATAATGT GCAGCTGAGCTATTTCAAGACTAAGGTCATAAAGGAACAGAGGAATTCCAGGGTTCTTGCAGAATCTCTGGGCACTGTTAGCGAGAAGCTGAGGAAGACA ATGGAGGAGAACCGTATTGTTAGACAGAGAACCCAAATGTATCATGAGGAGAACAAAGAAGAGCTTGATTTCCAAGAGAAGTTCTTCAAAGACCAACTGG AGCATATCCTTGAAAAAAGGAAGGCTCAGGAAGAGGAATTCGAGAATCGACAGCAGGAGGAGCGGAAGAAGGTTACAGGCCAGAGCTCTTATGGGTCTAA CAGTGGGGAGTACAGAACCAGGGTGGATGAGGTGTCGAGGTTCATACAGCTGCAGGACAAGGAGATGGAGCAGTTCGTGGAGGAGAGGGAGAAGATGGTG AAGCTGCACGAGGAGAAATACGTTCTGATGAGGCGCAAACACTGGCAGGACGAGGTGGATCTCGAGCAGGAGTTCGATACACAGCTGACCAATCTGATGA AGAAGTACACCCCGCAGAGCTCAGGCAGTGGTGGGAATGCTGCTGCCAAAGCTTGA
AA sequence Show only first row Show all	>Lus10019214 pacid=23141302 polypeptide=Lus10019214 locus=Lus10019214.g ID=Lus10019214.BGIv1.0 annot-version=v1.0 MSEEFDSDDSQKSHDTRKKSRWFKKFFDLLDSLTLDQINEPDRQWHCAACQNGPGAIDWFKGLQPLITHARTKGAKRVKLHRELAELLEEEMFRKGTSVF PSGEVYGQWRGLTEEENDYDVVWPPMVVVMNTRLDKDDNDKWTGMGNQELLEYFRAYDAVKAKHAYGPQGHRGMSLLIFEASSRGFFEATRLNTHFTNQG TDRNAWNQKWNSYKTGGKRQLYGFIATQEDVDLFNQHSHGKAKLRYEMRSYNEVVVRDYNRVCNDNVQLSYFKTKVIKEQRNSRVLAESLGTVSEKLRKT MEENRIVRQRTQMYHEENKEELDFQEKFFKDQLEHILEKRKAQEEEFENRQQEERKKVTGQSSYGSNSGEYRTRVDEVSRFIQLQDKEMEQFVEEREKMV KLHEEKYVLMRRKHWQDEVDLEQEFDTQLTNLMKKYTPQSSGSGGNAAAKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	0	1
AT2G26520			unknown protein		Lus10032762 [exp]	2.0	0.8872
AT2G14660			unknown protein		Lus10033766 [exp]	2.2	0.8987
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	4.9	0.8807
AT4G28100			unknown protein		Lus10018524 [exp]	7.3	0.8665
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	9.5	0.8441
AT1G61170			unknown protein		Lus10018461 [exp]	11.5	0.8687
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	11.8	0.8479
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	12.1	0.8253
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	12.4	0.8620
AT4G15790			unknown protein		Lus10008380 [exp]	12.8	0.8300

Compare expression of checked genes

Lus10019214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.