Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 181 / 2e-58 Protein of unknown function, DUF538 (.1) AT3G07460 164 / 1e-51 Protein of unknown function, DUF538 (.1.2) AT5G16380 144 / 9e-44 Protein of unknown function, DUF538 (.1) AT1G61667 113 / 5e-32 Protein of unknown function, DUF538 (.1) AT5G54530 110 / 8e-31 Protein of unknown function, DUF538 (.1) AT5G19860 94 / 5e-24 Protein of unknown function, DUF538 (.1) AT1G55265 83 / 7e-20 Protein of unknown function, DUF538 (.1) AT4G02370 68 / 3e-14 Protein of unknown function, DUF538 (.1) AT4G02360 67 / 4e-14 Protein of unknown function, DUF538 (.1) AT1G02816 67 / 4e-14 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004300 [exp] 233 / 7e-79 AT3G07470 158 / 4e-50 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 219 / 3e-73 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 207 / 7e-68 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 186 / 2e-59 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 176 / 6e-56 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10020218 [exp] 157 / 7e-49 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 154 / 4e-47 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 113 / 7e-32 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 109 / 3e-30 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177800 [exp] 191 / 3e-62 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 187 / 6e-61 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 119 / 2e-34 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 115 / 7e-33 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 101 / 3e-27 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 99 / 2e-26 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 96 / 9e-25 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 92 / 1e-23 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 90 / 8e-23 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 90 / 1e-22 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10019216 pacid=23141308 polypeptide=Lus10019216 locus=Lus10019216.g ID=Lus10019216.BGIv1.0 annot-version=v1.0 ATGTCCACCCTTACTTCTTCTTCCTCCTCCACTTCCTCTTCCATTTCCTCATTTCCTCATCTCCTAAGCCCCTTAATCACAATGATCCAACTACTCCCCC TCTCGTTAATCCTCCTCATCCTCTACAATCACACCGCCGAATCGAAATCAATCTACGACGTGTTAAGCACCAAAGGCCTGCCGATGGGCCTCCTCCCGAA AGGAATCACCAACTTCAAATTCGACTCCTCCGCCGGCTACTTCGAAGCCTATCTCGACCAAGCTTGTAATGCGAAATACGGGAGCCAGATTCACTACGAT CGCAACGTTTCGGGAACTCTGAGCTTCGGCAAGATCGACAGCTTGTCAGGAATCTCTGCTCAGGAACTTTTCCTCTGGTTCCCTGTGAAAGGAATCCGGG TCGATGTACCTAGCTCTGGGCTCATTTACTTCGACGTCGGCGTCGTTCTTAAGCAGTTCTCACTTTCGTTGTTCGAGACTCCGAAAGATTGCTCTGTTTC CGGTGGCCAGAGGACTGCCGTCGGTGGTTTGTTCGAGAGTGAAGAAGAGAAGCTGAGATATAGACATGGAGATCAAAACAATGGAAGAAGTATTCTATAA
AA sequence Show only first row Show all	>Lus10019216 pacid=23141308 polypeptide=Lus10019216 locus=Lus10019216.g ID=Lus10019216.BGIv1.0 annot-version=v1.0 MSTLTSSSSSTSSSISSFPHLLSPLITMIQLLPLSLILLILYNHTAESKSIYDVLSTKGLPMGLLPKGITNFKFDSSAGYFEAYLDQACNAKYGSQIHYD RNVSGTLSFGKIDSLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVLKQFSLSLFETPKDCSVSGGQRTAVGGLFESEEEKLRYRHGDQNNGRSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07470			Protein of unknown function, D...		Lus10019216 [exp]	0	1
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	14.0	0.7839
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	14.2	0.8140
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10043462 [exp]	17.9	0.8041
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	21.2	0.7193
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10033651 [exp]	35.1	0.8006
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	37.6	0.7994
AT5G66580			unknown protein		Lus10019659 [exp]	39.7	0.7260
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	39.8	0.7974
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	41.8	0.8023
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	47.6	0.7794

Compare expression of checked genes

Lus10019216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.