Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08450 788 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004299 [exp] 1444 / 0 AT5G08450 852 / 0.0 unknown protein Lus10004298 [exp] 136 / 3e-37 AT5G08450 130 / 5e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135800 [exp] 1029 / 0 AT5G08450 860 / 0.0 unknown protein Potri.T044700 [exp] 989 / 0 AT5G08450 796 / 0.0 unknown protein Potri.018G145560 [exp] 974 / 0 AT5G08450 801 / 0.0 unknown protein Potri.T044400 [exp] 673 / 0 AT5G08450 523 / 7e-176 unknown protein Potri.018G145546 [exp] 415 / 6e-141 AT5G08450 386 / 8e-129 unknown protein Potri.018G145542 [exp] 260 / 6e-80 AT5G08450 142 / 3e-37 unknown protein Potri.018G145552 [exp] 77 / 2e-17 AT5G08450 75 / 8e-18 unknown protein Potri.018G136502 [exp] 64 / 8e-13 AT5G08450 44 / 6e-07 unknown protein Potri.018G145550 [exp] 0 / 1 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0513 [flax] [poplar] LCCL-domain PF08642 [flax] [poplar] Rxt3 Histone deacetylation protein Rxt3
Representative CDS sequence Show only first row Show all	>Lus10019217 pacid=23141388 polypeptide=Lus10019217 locus=Lus10019217.g ID=Lus10019217.BGIv1.0 annot-version=v1.0 ATGAGTGGAGTTCCCAAAAGATCTCATGAAGAGGGAGGAGCTCATTCCTCTACACCGGGAGGTACATACCCTAAAATTACTCCTCAAGGAGTGGTTTCAA ACGAGTACCATGCTCCGTACGATATAAGCCAGGATGCTCGTGTTGCGAAGATTTCTCGCGATGTAGACCGGAAATCTCCGCTTCATTCGGTGTATCGAAT GCCGTCTGGTTCGAATGATTCTCATATGGAGACTACTCATCCTGTTGCTTCTTGTGGTAGCCGGGTGGAGTTAAGGGAGTCCAAGGATAATAAGGACCAT CGAGATCAAAGGACTGAAGCAAGGGATGCTCAAAGTGTTAAGCTAGAGAAGGATATGAGGGTAGAGGTTAGAAGAGATGATAAGCATGAAAGGGAAATGC ATAGTGATCCGAAAAATGAAGTGAAGTTGGAGAAGGATGGTTTGGTTCAGTCAGCAAGTAGTCAAGTGACTTGGAAAGAATCTAAAGAGTATCATAGAGG GAAGAGGTACTCTGAATCAGCTAATGTGCATGCCGATCCTTGGCATGTTTCAAGAGGAAATCCTCAAGCTCCGCCTGTGATTAGTAAGGAAGGTCAAAAT GTTGAAGGCAGGGAGTATATAGAGGCACGTGAGGCAGTTGGTGAGAATAAAGTTGAGTCGAAGAACGAGGATAGGTGGAAGGATAAGGATAAGAAGAGGA AAGATGCCAAGTATAGGGAGTGGGGGGATAAGGAAAGAAACGATAGGAAGGCAAACTTCCAGATTGGTAACAGCAGTGGTGGTGATGTCAAAGACTCAGC AAGAGAGGAAAGGGAACCGGATAGGATGGAAAGGGAAAGGAAGGATCTTTCTAAGGACAGGGAAAAGCCAAAGGATCATACGAAACGAGAGTCGTGGAAT GGTGTGGAGAAAGAAAGTTCCCACAGTGAGAAAGATACGGGTGGTGATATGTCTGTCAAAGTACCTAAGGTGGAAACCCCGGCTTTTGAACACAAAAAAC CAAAAGATCTTGATGCCTGGAAAAATCTCGATAGGGAAAATAAAGAGAAGAGAAAAGAGAAGGAGGGTGATACAGAAGGAGATAAACAACAGAAGCGTGT CAGGTTGGGTGAAAAGGAATCCGATGATGGATTGCCGGATGGTGAAGGAGGTAGTGAAAGGGAGCGTGAGGCTTTTAATTATGGGGTGCAGCAGCGTAAG AGGATGCTCCGGACGAGAGGCAGTCCTCATGTTGCAAATCTCGAGCCCCATTCTAAGGCACACACTCAAGAAAATGAAGGATCCCAAGGCAAATCCGAGG TATCCACGGTGGTCTACAAAGTTGGAGAATGCATGCGGGATCTGATCAAGATGTGGAAAGAGTATGAATCAACTCAACCTGAAAAAAATGGGGATAGTAC TACTCATAATGGCCCCACTCTGGAAATTCGGATACCAGCAGAAAACATCACAGCTACAAACCGTCAAGTCAGAGGTGGTCAGCTTTGGGGGACAGATATA TACACGGATGACTCAGACCTCGTTGCTGTTCTTATGCACACGGGATACTGCCGGCCCACTGCTTCTCCTCCTCCGCCTGCCATCCAAGAGTTGCGTGCCA CCATAAGGGTTTTGGCTCCACAAGATAGCTATACTTCAATGCTCAGAAATAATGTTCGCTCCCGTGCTTGGGGAGCTGGAATTGCCTGTAGCTACCGTGT GGAGCGCTGCTGCATTGTGAAGAAAGGAGGAGGAACTATTGATCTCGAGCCTTGTCTCTCGCATACATCTGCAGTGGAGCCTACTCTCGCTCCTGTTGCT GTCGAGCGGACGATGACCACAAGAGCTGCAGCTTCAAATGCATTACGGCAACAAAGATTCGTTCGTGAAGTTACGATACAGTACAACCTCTGCAATGAGC CCTGGATAAAATACAGCATCAGTGTTGTTGCCGACAAAGGACTAAAAAAGCCGCTCTACACATCTGCACGCTTGAAGAAGGGAGAAGTTCTGTATTTGGA AACCCATTCTTGCAGGTACGAGCTGTGTTTTGCCGGGGAGAAGATGGTACGAGCTTCGCAAGCAGCGCAGCAGCACGAAGACACAGACAAACCATCGTCG CAAAGTCGTCCTCCACATCCTTCCAACGGCGATAACTCCGACAATCTACTAATTGATGCTTTCCGGTGGTCTCGATGCAAGAGGCCCTTACCTCAGAAGT TGATGCGATCTGTCGGGATCCCACTTCCTCTTGAGCATGTTGAGGTGGTGGCGGAGAACCTCGACTGGGAAGACGTGCAGTGGTCGCAGACGGGTGTGGT GGTAGCTGGGAAAGAGTACACTCTAGCTAGGGTTCATTTTCTGTCTCCAAGTTGA
AA sequence Show only first row Show all	>Lus10019217 pacid=23141388 polypeptide=Lus10019217 locus=Lus10019217.g ID=Lus10019217.BGIv1.0 annot-version=v1.0 MSGVPKRSHEEGGAHSSTPGGTYPKITPQGVVSNEYHAPYDISQDARVAKISRDVDRKSPLHSVYRMPSGSNDSHMETTHPVASCGSRVELRESKDNKDH RDQRTEARDAQSVKLEKDMRVEVRRDDKHEREMHSDPKNEVKLEKDGLVQSASSQVTWKESKEYHRGKRYSESANVHADPWHVSRGNPQAPPVISKEGQN VEGREYIEAREAVGENKVESKNEDRWKDKDKKRKDAKYREWGDKERNDRKANFQIGNSSGGDVKDSAREEREPDRMERERKDLSKDREKPKDHTKRESWN GVEKESSHSEKDTGGDMSVKVPKVETPAFEHKKPKDLDAWKNLDRENKEKRKEKEGDTEGDKQQKRVRLGEKESDDGLPDGEGGSEREREAFNYGVQQRK RMLRTRGSPHVANLEPHSKAHTQENEGSQGKSEVSTVVYKVGECMRDLIKMWKEYESTQPEKNGDSTTHNGPTLEIRIPAENITATNRQVRGGQLWGTDI YTDDSDLVAVLMHTGYCRPTASPPPPAIQELRATIRVLAPQDSYTSMLRNNVRSRAWGAGIACSYRVERCCIVKKGGGTIDLEPCLSHTSAVEPTLAPVA VERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISVVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFAGEKMVRASQAAQQHEDTDKPSS QSRPPHPSNGDNSDNLLIDAFRWSRCKRPLPQKLMRSVGIPLPLEHVEVVAENLDWEDVQWSQTGVVVAGKEYTLARVHFLSPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08450			unknown protein		Lus10019217 [exp]	0	1
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	2.4	0.9200
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	3.0	0.9136
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	3.9	0.9274
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	7.4	0.8997
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10005410 [exp]	8.1	0.9066
AT1G11240			unknown protein		Lus10011247 [exp]	10.2	0.8977
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	10.4	0.8992
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	12.6	0.9002
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	13.1	0.9134
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	13.7	0.9060

Compare expression of checked genes

Lus10019217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.