Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23520 303 / 8e-100 smr (Small MutS Related) domain-containing protein (.1) AT2G26280 60 / 2e-09 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004296 [exp] 644 / 0 AT5G23520 267 / 8e-86 smr (Small MutS Related) domain-containing protein (.1) Lus10038081 [exp] 58 / 6e-09 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1) Lus10009796 [exp] 56 / 2e-08 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T013000 [exp] 376 / 2e-128 AT5G23520 361 / 8e-122 smr (Small MutS Related) domain-containing protein (.1) Potri.018G145524 [exp] 99 / 6e-25 AT5G23520 86 / 2e-20 smr (Small MutS Related) domain-containing protein (.1) Potri.006G218900 [exp] 52 / 4e-07 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.018G047700 [exp] 51 / 1e-06 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771) PF01713 [flax] [poplar] Smr Smr domain
Representative CDS sequence Show only first row Show all	>Lus10019219 pacid=23141433 polypeptide=Lus10019219 locus=Lus10019219.g ID=Lus10019219.BGIv1.0 annot-version=v1.0 ATGAAGCCGTCAAGGACGAGGGTTAAGTCCCCGGGATGGGCTGCCTTCAATCTCAAGCAACAAGAGAACGCCGGAGGTCAGCTTGAAAAACCTCGCAATG ATCCATTCCCACCTGTTTCGACTGCATCCACCTCGCTCAATTCGCGTGGCAATGGAGTCGGTACTAAGAAGAACAAGAAGTTGTTTACATCGGTCCTTCT ACCAACTGCTGAATTCCCAACCTTGGTGGATAAGAGCAGTGCCATCAGGGGAGACCAAGCTGGCACAGGTTTAGATAGTTCTCTTCAGAAGCTGAAAGAG CTTCACAGTTGGGCCGATAGTTCTTTGGTTGAAGATATCGTAGCCGCTGCAGATGGTGACGTTGAAAAGGCATCATCTTTGCTGAAAGAAATGTATGGTA ATACTCCTTGCAATAATGGGAGGGATAAGGGTGTTGTTCTGTCAGGGAATACGACGGACCTTGCTGCAGAGATTACTGATCTGAGTTCTACGATCGAGAA TGCTCTTAGTGGTACTCGTCAGCCATTGCAATTTGATGATGCTACTACAAACATGGAACGGGTGCTGCAGCATTTGAGATCTATTCCATCTGAGCCGGAG TGGGAAGAGGATGATATCTATGTAAGCCGCCGAAAGGATGCAATAAAGATGATGAGATCAGCTTCCCAACATTCCAGGGCAGCCTCTAATGCCTTCCTAA GAAACGACCATATATCCGCACGAGAACACTCCTTGAAAGCGCAAGGGGACTGGATGGCGGCGGAGAAACTCAATGCCAAAGCAGCCAGAGAGATCTTGAG TGTAAGAAACAACGGCAGTAATCCGTGGAAGCTAGACCTGCACGGTCTTCATGCATCAGAGGCTGTTCAAGCCTTGAAAGAACACTTGTACAAGATAGAG ACTTTGCTTTCGGTAAATCGTGCACCTTCTCCCTGTAAGATGAAAATAACGAATGGAATGGTGCGATCTTCATCCCTCGAGTCCTTTGACACTACCATTA GACAGAGATCGCCATTACAAGTTATAACAGGTGTAGGCAATCATAGCCGGGGTGAAGCTGCATTGCCAAGTGCAGTGAGAAGCTTCCTTAATGAAAATGG TTACCGCTCCGATGAGACGAGGGCTGGTGTCGTATCCGTTTGGCCTAAATTTCGGGTCAGGTGA
AA sequence Show only first row Show all	>Lus10019219 pacid=23141433 polypeptide=Lus10019219 locus=Lus10019219.g ID=Lus10019219.BGIv1.0 annot-version=v1.0 MKPSRTRVKSPGWAAFNLKQQENAGGQLEKPRNDPFPPVSTASTSLNSRGNGVGTKKNKKLFTSVLLPTAEFPTLVDKSSAIRGDQAGTGLDSSLQKLKE LHSWADSSLVEDIVAAADGDVEKASSLLKEMYGNTPCNNGRDKGVVLSGNTTDLAAEITDLSSTIENALSGTRQPLQFDDATTNMERVLQHLRSIPSEPE WEEDDIYVSRRKDAIKMMRSASQHSRAASNAFLRNDHISAREHSLKAQGDWMAAEKLNAKAAREILSVRNNGSNPWKLDLHGLHASEAVQALKEHLYKIE TLLSVNRAPSPCKMKITNGMVRSSSLESFDTTIRQRSPLQVITGVGNHSRGEAALPSAVRSFLNENGYRSDETRAGVVSVWPKFRVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	0	1
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	1.4	0.8559
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10040963 [exp]	2.0	0.8077
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	3.2	0.8117
AT4G20190			unknown protein		Lus10038386 [exp]	3.2	0.7883
AT1G26180			unknown protein		Lus10035081 [exp]	6.6	0.7873
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	7.3	0.7623
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	12.7	0.7973
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	14.1	0.7672
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	15.0	0.7940
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	15.5	0.8090

Compare expression of checked genes

Lus10019219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.