Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49160 1669 / 0 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G14140 1613 / 0 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G08990 1609 / 0 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G13610 1449 / 0 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G19020 220 / 9e-58 CMT2 chromomethylase 2 (.1) AT1G69770 213 / 7e-57 CMT3 chromomethylase 3 (.1) AT1G80740 194 / 7e-51 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004295 [exp] 2927 / 0 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10010796 [exp] 214 / 8e-58 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10014315 [exp] 216 / 2e-57 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 213 / 2e-56 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 208 / 4e-55 AT1G69770 855 / 0.0 chromomethylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134000 [exp] 2073 / 0 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 2068 / 0 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.018G138000 [exp] 2067 / 0 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.001G009600 [exp] 213 / 3e-56 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 213 / 7e-56 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 84 / 4e-16 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain PF12047 [flax] [poplar] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10019220 pacid=23141417 polypeptide=Lus10019220 locus=Lus10019220.g ID=Lus10019220.BGIv1.0 annot-version=v1.0 ATGGGCTCTGCATCAAAGTTGATCTCGACAGCGCCTGATCCGGAAGCGGAGGATCCGTCATTGGCCGAATCAGGGAAGGGGGCAATTCCTTCGGATTCCA AATCTAGAAAGGCAGTGGCAAGCACTAAAGGAAAGAAGAAGCGTGAAACTGCAAAGAGCATTGAACCTCGTGCTTCACCACCGAAGCGGCCGAGAAGGGC TGCTGCATGTGTGAATCTGAAGGAGAAATCCGTGAAGCTGACTGATGAGTACACAGTTATCGAACCGAAGAAGGAGCAAGTTGTTCAAGATGAACTTCTC GCTGTTCGCTTGACTGAGGGACAAGGAGAGGACGGTCGTCCGAATAGAAGACTGACTGATTTCATCGTCCATGATGCAGATTTCGCTCCACAGTATCTGG AGATGATTGAAGTTAGTGATATGTTTATCTCTGGTGTCATATTACCGATCGATGATTGTATGGGGGATGACAAAGAGAAGCGGGTGAGGTGCGGCTACCG GAAGTTTTATGATCGGTTTTTCGAGAAAGCTCGAGCTTGTATAGAAGTGTACAAGAAGCTGTCGAAATTTGCTGGTGGGAATCCTGACCTCAGCCTTGAT GAGTTGCTTGCTGGGCTTGTTCGTTCTTTTGGCAGTAGCAAGTGCTTTTCTGGGGCATCATCTATTAAAGAGTTTCTTATCTCACAAGGTGAGTTCATAT ACGATCAACTGAAAGGTTTAGATGAGACATCGAAGCAGAATGATATGAAGTTCTCAGAGCTGCCTGTGCTTTTGGCTTTAAGAGATAAGAGCAAGAAACA TGAGAGTTTCATACTGGAAGGAGCAGTTGGCTATGGTGGTAGTGGGACGTTGGTTATTGAACCAAATGCTGATAAGAAAGACACAAAGATGGATGAAGTA AATGGATCTGCTGGTAATGATGAGGACGAGGATGCAAAATTAGCCCGGATGCTGCAGCAGGAAGAATTATGGGCATCCATGAAGCAGAAGAAAAGAAAAG GCTCATCCATGTCGAATGCTATCTACATTAAGGTCAATGAAAGAGATATTGCGAATGATTATCCTCTCCCTGCATACTACAAGCAAACCGTTGAAGAAAC TGATGAGTATATAGCCGTTGACTGTGATGATGTGATCAACCCTGATGACCTGCCAAGAAAAGTGCTTCATAATTGGTCACTTTATGATTCAGATTTACGG TTCATGTCCTTGGAGCTTCTGCCAATGAGACCGTGTGAAGATATTGACATCACCATCTTTGGGTCTGGTTTGATGACTGAAGATGACGGGGCAGGATTCT GCCTTGAAGACGATCCTGATCAATCTTCTTCAGGTGCTTCGGCTTCGCCTGATGAGATGGGATTGCCAATTTTTTTGAGTGCTATAAAGGAATGGATGAT TGAGTTCGGGGCTTCCATGGTTTTCGTATCAATTCGCACAGATATGGCCTGGTACAGACTTGGGAAGCCGTCAGCACAGTATGCACCATGGTTTAAGATT GTTCTCAAGACAGCAAAACTCGGAATTAGCATTATCTCATTATTAAAGGAGCAAAGTCGAGTATCCAAACTTTCTTTTGCAGAAGTAGTTAAGAAAGTTT CGGAGTTCAAGAAGGATAACGATGGCTACATTTCCTCTGACGTGGCCGTTGCTGAGAGATTTGCTGTTGTGCATGGGCAGATACTAGTGCAACTCTTTGC TGAATTCCCTGATGCTAAAATCAAGAAAAGTGCATTTGTTACTGGCCTTACAAACAAAATGGAAGAGCGTAAACATACAAAATGGGTTGGTGGGAACAAG AAGCAACTGATTTTGCAGAGGGGCCAAGCTAATTTGAACCCTCAAGCTAACATGGGACCTGTAGTTTCCAAGAGGAAGGCTATGCAGGCTACGACAACAA GATTGATTAACAGGATCTGGGGAGAATACTATTCGAATTACTCGCCGGAGGATTTGCAAGAGGAAACAAATGAGAAGGTAAAAGAGGAACATGTCGTTGA GGAGCAAGAGGAAAATGAGGATGATGCCGAAGAGGAGAAAGAGGAGACAATAGTTGTTCCAGAGGAAGTGCAAAAACCATCCCCTGGATCAGTGAAAGTC CGGTCATCATGCAAGTCGAATGTGGAAGCAAGATGGGAAGGTAATCCCGGAAAGGTAATTCTTGGTAAAACTATTTACAGTCGAGCTATCATCCATGGAG AGACCATTGAGGCTGGGAGTGCTGTCATGGTTGATGAAGATGATGATGATGACCTCCCTGCCATCTACTTCATAGAGTACATGTATGAAACGAAAAATGG TGCCAAAATGGCTCATGGAAGAATGATGCAACGTGGTTCTGAGACTGTTCTTGGAAATGCATCCAATGAGAGAGAGGTCTTCTTAACAACCAACTGCTCA GATTTCCAACTGCAGGATGTTAAGCAGCTCGTTGTTGTCGAAATCCGGAAAATGCCGTGGGGTTATTATCATAGGAAGGATCATTTGAATGCTGGCAGAC AGGATAGAGCAAGGGCGGAAGAAAGGAAAAAGAAAGGATTGCCTTTGGAGTATTACTGTAAAAGTTTGTATTGGCCGGAGAAGGGTGCTTTCTTTAGTCT TCCATCTGATGGCATGGGTCTTGGTTCTGGTATTTGCCAGTCGTGTAAGATTAATGAGGCTGATGAGGAGAAGTATACATTTAAAGTGAATTCTTCAGGC ACAGGATTCTCGTGGGAAGGAGCTGAGTACTCCATCGACGACTTTGTTTATGTTCAGCCGGAGAACTTTGCCTTACGAAGAAAGGAAACTGGAACTTTTA AAGGTGGAAGGAATGTTGGTCTAGAAGCTTATGCTATATGCCAATTGGTGCAGATCATTGCAGGAAAGCAAGAGATCGAAGAATCTACTCAGGTTGAAGT CCGAAGATTCTTCAGACCAGAGGACATTGCTTCTGAGAAAGCATATGGTTCTGATATCCGCGAGATATACTACAGCGAGGAAACGCATACTTTACCTGTT GAGATGATAGAAGGGAAATGTGAAGTCAGAAAGAAAATCGACGTTCCTGCTTGTAACGTTACCACAGTTTTGGATCATATCTTCTTTTGTGAGCGTCTCT ACGATCCTTCTAATGGTTCACTTCGGCAGTTGCCAGCTAACACCAATCTAAGGTATTCCAGCCTTGGTGGCAATGGCGATGTTGCTTCTAGGAAGAGGAA GGGTAAAGGTAAAGAGGTTGAAGTTGATGAAGCAGTGGAGAAACCAAAGGAAGAATCTCAAGGAAACCTTTTGGCCACATTGGATATTTTTGCTGGCTGT GGTGGCTTATCAGAAGGGCTACGTCAAGCTGGTGTGTCGGTTACGAAGTGGGCTATCGAGTATGAGGAACCAGCTGGTGAAGCATTCAGATTGAACCATC CTGAATCGCTGGTCTTCGTCAACAACTGTAATGTGATTCTGAAGGCTGTCATGGAGAAATGCGGTGATACAGATGACTGCATCTCAACTTCAGAGGCTGC TGAATTGGCTGCTGCACTTGGTGAGAATGTCATCAAAGATTTACCTATGCCAGGACAAGTGGAATTCATTAACGGAGGGCCTCCATGTCAGGGATTCTCC GGGATGAACAGGTTTAATCACAGCACATGGAGTAAGGTTCAATGCGAGATGATCTTAGCATTCCTATCCTTTGCCGATTACTTCAGACCTAAGTACTTCC TCCTGGAGAATGTGAGGAACTTCGTCTCCTTCAACAAAGGACAGACCTTTCGCTTAACCTTGGCTTCGCTTCTCGAAATGGGTTATCAGGTGAGATTTGG CATCTTAGAAGCTGGAACGTTTGGCGTTTCACAGTCACGGAAGCGTGCTTTCATATGGGCAGCTGCACCAGACGAGGCTCTCCCTGAATGGCCAGAGCCT ATGTACGTCTTCGGCGGACCGGAATTGAAAGTCTCTCTGTCTAGCAAACTGCAGTATGCTGCTGCGAGAAGCACTGCTGGCGGAGCTCCTTTCCGAGCTG TAACTGTCCGAGACACGATCGGAGATCTCCCTGCCGTGACCAATGGTGCCTCCAAAGCAACTCTAGAGTATTCGAATGATCCCGTGTCCTGGTACCAGAA ACAAATCCGAACCAACATGGCTGTTCTCACCGATCACATATCTAAAGAAATGAACGAGCTGAATCTCATCCGGTGCAAGAAGATTCCGAAGCGGCCTGGT GCTGATTGGCGTGATCTCCCAGAAGAAACAGTTACATTGTCGAACGGGCAGAAGGCCGACCTAATCCCATGGTGCTTGCCAAACACGGCAGCTCGCCACA ACCAGTGGAAGGGACTGTTCGGGAGGCTGGACTGGGAAGGCAACTTCCCAACCTCCATCACCGATCCTCAACCCATGGGCAAAGTCGGGTTGTGCTTCCA TCCTGATCAGGACAGGATCGTTACGGTCCGCGAGTGTGCTCGATCTCAAGGATTCCCTGATAGCTATCAGTTCGCTGGTAACATCATTAGCAAGCATCGT CAGATTGGAAATGCAGTTCCTCCGCCGTTGGCTTATGCGTTGGGAAGGAAGCTGAAGGAAGCCGTTGATAGTAAGAAGGTGAAAGAGTTAGAGAGTTATG AGTAG
AA sequence Show only first row Show all	>Lus10019220 pacid=23141417 polypeptide=Lus10019220 locus=Lus10019220.g ID=Lus10019220.BGIv1.0 annot-version=v1.0 MGSASKLISTAPDPEAEDPSLAESGKGAIPSDSKSRKAVASTKGKKKRETAKSIEPRASPPKRPRRAAACVNLKEKSVKLTDEYTVIEPKKEQVVQDELL AVRLTEGQGEDGRPNRRLTDFIVHDADFAPQYLEMIEVSDMFISGVILPIDDCMGDDKEKRVRCGYRKFYDRFFEKARACIEVYKKLSKFAGGNPDLSLD ELLAGLVRSFGSSKCFSGASSIKEFLISQGEFIYDQLKGLDETSKQNDMKFSELPVLLALRDKSKKHESFILEGAVGYGGSGTLVIEPNADKKDTKMDEV NGSAGNDEDEDAKLARMLQQEELWASMKQKKRKGSSMSNAIYIKVNERDIANDYPLPAYYKQTVEETDEYIAVDCDDVINPDDLPRKVLHNWSLYDSDLR FMSLELLPMRPCEDIDITIFGSGLMTEDDGAGFCLEDDPDQSSSGASASPDEMGLPIFLSAIKEWMIEFGASMVFVSIRTDMAWYRLGKPSAQYAPWFKI VLKTAKLGISIISLLKEQSRVSKLSFAEVVKKVSEFKKDNDGYISSDVAVAERFAVVHGQILVQLFAEFPDAKIKKSAFVTGLTNKMEERKHTKWVGGNK KQLILQRGQANLNPQANMGPVVSKRKAMQATTTRLINRIWGEYYSNYSPEDLQEETNEKVKEEHVVEEQEENEDDAEEEKEETIVVPEEVQKPSPGSVKV RSSCKSNVEARWEGNPGKVILGKTIYSRAIIHGETIEAGSAVMVDEDDDDDLPAIYFIEYMYETKNGAKMAHGRMMQRGSETVLGNASNEREVFLTTNCS DFQLQDVKQLVVVEIRKMPWGYYHRKDHLNAGRQDRARAEERKKKGLPLEYYCKSLYWPEKGAFFSLPSDGMGLGSGICQSCKINEADEEKYTFKVNSSG TGFSWEGAEYSIDDFVYVQPENFALRRKETGTFKGGRNVGLEAYAICQLVQIIAGKQEIEESTQVEVRRFFRPEDIASEKAYGSDIREIYYSEETHTLPV EMIEGKCEVRKKIDVPACNVTTVLDHIFFCERLYDPSNGSLRQLPANTNLRYSSLGGNGDVASRKRKGKGKEVEVDEAVEKPKEESQGNLLATLDIFAGC GGLSEGLRQAGVSVTKWAIEYEEPAGEAFRLNHPESLVFVNNCNVILKAVMEKCGDTDDCISTSEAAELAAALGENVIKDLPMPGQVEFINGGPPCQGFS GMNRFNHSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGTFGVSQSRKRAFIWAAAPDEALPEWPEP MYVFGGPELKVSLSSKLQYAAARSTAGGAPFRAVTVRDTIGDLPAVTNGASKATLEYSNDPVSWYQKQIRTNMAVLTDHISKEMNELNLIRCKKIPKRPG ADWRDLPEETVTLSNGQKADLIPWCLPNTAARHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGLCFHPDQDRIVTVRECARSQGFPDSYQFAGNIISKHR QIGNAVPPPLAYALGRKLKEAVDSKKVKELESYE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	0	1
AT1G04650			unknown protein		Lus10011755 [exp]	1.7	0.9569
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	2.4	0.9411
AT1G67040			unknown protein		Lus10033565 [exp]	3.2	0.9525
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	3.5	0.9422
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	3.9	0.9280
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	4.2	0.9429
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	6.5	0.9370
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	8.1	0.9422
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	11.3	0.9369
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	12.7	0.9350

Compare expression of checked genes

Lus10019220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.