Plant FIBer expression Database

Lus10019221 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004294
[exp]
293 / 1e-93 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G133300
[exp]
140 / 1e-37 ND /
PFAM info
Representative CDS sequence
>Lus10019221 pacid=23141339 polypeptide=Lus10019221 locus=Lus10019221.g ID=Lus10019221.BGIv1.0 annot-version=v1.0
ATGGCGGAGAGTGGAGTCCATAAAAGTAAGAAGACCACTAAACCATCTAGCTTATCCTCACCAGTACTCCACCTTCACGACGACATCGCGATTGATGACT
CCACCGAACACAGTACAAATTCCCACCGATCCTTGATTCGCCGTTCATCTCCGTTCATCTCTTATCTCACTGTCTCCACCGCAGCTGGAACTTCCAATTT
CCACCTTCCTCTCTTTGATTCCGCTTCTCCTCGTTTCCAATCTACTTCTTCTGCTGGAAGGCAACGACTGCTTGAGTTCTCTGCCTTGGATTGCCTTATT
TCTAAATACTTGCAGCTACCTGTATCAACGTCGGCGGTGTCATTGTTGAGTAAAGGTAGGGCAAGTAGAAAGAGCAGGTTAGCTTTGAAAGAAGGTCTGT
ATGCTGTCTCACTTCTTTATGCCGTAATAACTCTAGTCAATGCATCTAACGTTGAAGTTCTGGAGAAGATTTGTGCGAAGGATGTGCAAACGTTTCTGGC
TTATTTGAGAAATCTGTGGGGAAAGGTGCATAATCAGGTGTTTCATGGATTAAGTTTAGACTTAGTATCTGGCAGAGAGCTCTCATGTGTGAATAATACT
GAGGTCAATGGTCTGGCTCAATGCATCTTTAAGCTCTCTCTTACTACTAGACAGTTTGCATCATTGCCATCTGCATTTGTAAAGAGTGGAGTGTTTGGTT
CTGGCAAATCTACCTTTGAAGTTTTCTTATCAAGTCAGTGGGAGACATCCCCCGCAATGATCAGAAGCCATTCTAGCCCTTTGACTGAAAAGGATGAAAT
ATTGGGCTCCTTCTGCAGAATCATTTCCTGA
AA sequence
>Lus10019221 pacid=23141339 polypeptide=Lus10019221 locus=Lus10019221.g ID=Lus10019221.BGIv1.0 annot-version=v1.0
MAESGVHKSKKTTKPSSLSSPVLHLHDDIAIDDSTEHSTNSHRSLIRRSSPFISYLTVSTAAGTSNFHLPLFDSASPRFQSTSSAGRQRLLEFSALDCLI
SKYLQLPVSTSAVSLLSKGRASRKSRLALKEGLYAVSLLYAVITLVNASNVEVLEKICAKDVQTFLAYLRNLWGKVHNQVFHGLSLDLVSGRELSCVNNT
EVNGLAQCIFKLSLTTRQFASLPSAFVKSGVFGSGKSTFEVFLSSQWETSPAMIRSHSSPLTEKDEILGSFCRIIS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10019221
[exp]
0 1
Lus10007204
[exp]
10.0 0.9019
Lus10003006
[exp]
12.9 0.8340
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Lus10002605
[exp]
18.8 0.9017
AT2G28290 CHR3, SYD SPLAYED, CHROMATIN REMODELING ... Lus10033980
[exp]
22.0 0.9011
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Lus10041322
[exp]
24.7 0.8981
AT2G36850 CHOR, ATGSL8, A... CHORUS, glucan synthase-like 8... Lus10040892
[exp]
27.6 0.8996
AT1G77800 PHD finger family protein (.1.... Lus10009785
[exp]
27.9 0.8954
AT4G39420 unknown protein Lus10006814
[exp]
34.8 0.8977
Lus10008200
[exp]
35.6 0.8919
AT1G58230 binding (.1) Lus10042867
[exp]
36.4 0.8949

Lus10019221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.