Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004293 [exp] 181 / 6e-60 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G071700 [exp] 39 / 0.0003 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019223 pacid=23141337 polypeptide=Lus10019223 locus=Lus10019223.g ID=Lus10019223.BGIv1.0 annot-version=v1.0 ATGGATCATGTTTATTGGTCCAGCAGATTTCTCTCTTTCAAGTCTCACAACAGAATCAACGCCTGGTTCTTTCTTCTCACAAGAACAGATCATCATCTTA GCACAATGAAATCATTGTATTTCATTATTTTCTGTTTCCTGGCAACTGCTATCTGTTTCTTTTATAATGATTTCAGTTCTTCTTCCTCTATTCTTATTCC CCTATCAAGTAGGAGATCTATGAGGGAATGGAACGTACCGATATCTACTGCAAGCCTCGATGGACACGGCGAGGGCAAGGTTCTTGACGAAGAAAAGCGA AAGAATTGGAAGGAAGGAGCAGACCAAGTTCAGAATGTGAAAAGTGAGGATCAAGAGGATGAGCTTATTTACCACATTGATTACAATGGTGTGATGACTC ATCCAACTCCAACTCCAAAGGATAGACCATAG
AA sequence Show only first row Show all	>Lus10019223 pacid=23141337 polypeptide=Lus10019223 locus=Lus10019223.g ID=Lus10019223.BGIv1.0 annot-version=v1.0 MDHVYWSSRFLSFKSHNRINAWFFLLTRTDHHLSTMKSLYFIIFCFLATAICFFYNDFSSSSSILIPLSSRRSMREWNVPISTASLDGHGEGKVLDEEKR KNWKEGADQVQNVKSEDQEDELIYHIDYNGVMTHPTPTPKDRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019223 [exp]	0	1
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	1.4	0.9944
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	2.8	0.9898
					Lus10025807 [exp]	3.0	0.9909
					Lus10004293 [exp]	11.5	0.9788
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012185 [exp]	13.5	0.9923
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	22.2	0.9646
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	22.2	0.9646
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	23.6	0.9765
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10026064 [exp]	24.1	0.9736
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	25.8	0.9885

Compare expression of checked genes

Lus10019223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.