Plant FIBer expression Database

Lus10019224 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30390 728 / 0 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
AT5G26030 506 / 7e-177 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004292
[exp]
894 / 0 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2)
Lus10023607
[exp]
513 / 5e-179 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2)
Lus10024237
[exp]
508 / 3e-177 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2)
Lus10007924
[exp]
509 / 6e-177 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2)
Lus10013461
[exp]
369 / 4e-124 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T010900
[exp]
778 / 0 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2)
Potri.T010901
[exp]
776 / 0 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2)
Potri.004G138400
[exp]
774 / 0 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2)
Potri.006G232100
[exp]
507 / 6e-177 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0043 Chelatase PF00762 Ferrochelatase Ferrochelatase
Representative CDS sequence
>Lus10019224 pacid=23141392 polypeptide=Lus10019224 locus=Lus10019224.g ID=Lus10019224.BGIv1.0 annot-version=v1.0
ATGAGTTCTGGACTAACCTACGCCGTTTCAACTCCGTCTCATGCTTCTTCCTCTTCTTATACAGCTCAACGCAACTCGAGATCCCCCATGCTATTACCAC
GGCCAGTTCCAGTATCACCAAGGTTGCAATGCTCATCCGCTTTCCACGTTGATAGTTGCCTTACTTCTTACCCCAATAAAAGCCACGTCAACTCCAAGTG
TTCTTTCGGCGGCTCACTACAACAACTTGATAATAAATGTAAATGGCCATTGAGAGCCTTGGTGACTTCAACAGCTCAAGACATCTCAGTATCATCTCTA
ATTGTCAATGAGAAGATAGGAGTACTCTTGCTGAATCTTGGTGGCCCCGAGACCCTCGACGATGTCCAGCCTTTCCTGTTCAACCTTTTTGCAGACCCTG
ATATCATACGGCTTCCAAGGGTGTTTGGCTTTCTACAAAAGCCTCTGGCCCAATTCATATCAGTTGTTAGAGCGCCCAAAAGTAAGGAAGGGTACGCTTC
GATCGGTGGCGGTTCTCCTCTGCGACAGATAACTGATGCTCAGGCATTATTCATCTTCACTCAGGGAGAAGCATTGAGAAAGTCCCTTTGGGAGAAGGAT
GTTCCTGCTAAAGTCTATGTTGGCATGCGTTACTGGCATCCGTTTACTGAAGAAGCAATAGAACAGATAAAGAGAGACGGCATTTCAAAACTTGTGGTTC
TTCCATTATATCCACAGTTTTCGATATCAACTAGCGGTTCCAGCCTTCGACTATTGGAGAGTATATTCCGGTCAGATGAGTACCTTGTGAACATGCAGCA
CACAGTGATTCCATCCTGGTACCAGCGTGAAGGATACATTAAAGCCATGGTCAATTTAATCGAGAAGGAACTCAGCAATGAAATCCAGAATTCCCTTTTC
CAGGTCGTGATATTCTTCAGTGCACATGGAGTGCCACTAGCGTATGTGGAAGAGGCTGGTGATCCATACAAGGCAGAAATGGAGGAATGTGTAGACTTGA
TTATGGATGAATTAGAGAAGAGAAAGCTTGCTAACTCATACACTCTTGCCTATCAGAGCAGAGTTGGACCTGTGGAGTGGCTGAAACCTTATACTGACGA
GACAATCATCGATCTAGGGAGAAAAGGGGTCAAAAGTCTTCTCGCTGTCCCTATAAGTTTCGTTAGTGAACACATCGAAACCCTGGAAGAGATCGACGTT
GAGTACAAGGAGTTGGCTCTGGAGTCCGGCATAGAAAACTGGGGACGTGTTCCTGCACTGGGATGTGAACCAACCTTCATCTCAGACCTGGCAGATGCTG
TGATAGAGAGCCTCCCTTATGTCGGAGCCATGGCAGTATCTAATCTCGAAGCTCGACAGTCTTTAGTTCCACTGGGCAGCGTTGAGGAGTTGCTGGCAGC
GTACGATTCGAAACGGAGGGAACTACCACCACCGGTGATGGTATGGGAATGGGGATGGACAAAAAGTGCAGAGACTTGGAATGGGAGAGCAGCTATGTTG
GCATTTCTGCTTCTCTTGTTCTTAGAAGTCACCACTGGAGAAGGTTTCCTGCACCAGATTGGTGTGTTGCCTTTGTTTCACTGA
AA sequence
>Lus10019224 pacid=23141392 polypeptide=Lus10019224 locus=Lus10019224.g ID=Lus10019224.BGIv1.0 annot-version=v1.0
MSSGLTYAVSTPSHASSSSYTAQRNSRSPMLLPRPVPVSPRLQCSSAFHVDSCLTSYPNKSHVNSKCSFGGSLQQLDNKCKWPLRALVTSTAQDISVSSL
IVNEKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRVFGFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQALFIFTQGEALRKSLWEKD
VPAKVYVGMRYWHPFTEEAIEQIKRDGISKLVVLPLYPQFSISTSGSSLRLLESIFRSDEYLVNMQHTVIPSWYQREGYIKAMVNLIEKELSNEIQNSLF
QVVIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMDELEKRKLANSYTLAYQSRVGPVEWLKPYTDETIIDLGRKGVKSLLAVPISFVSEHIETLEEIDV
EYKELALESGIENWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSKRRELPPPVMVWEWGWTKSAETWNGRAAML
AFLLLLFLEVTTGEGFLHQIGVLPLFH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30390 FC2, FC-II, ATF... ferrochelatase 2 (.1.2) Lus10019224
[exp]
0 1
AT2G30390 FC2, FC-II, ATF... ferrochelatase 2 (.1.2) Lus10004292
[exp]
1.0 0.9647
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10001560
[exp]
1.4 0.9316
AT1G69830 ATAMY3, AMY3 alpha-amylase-like 3 (.1) Lus10036717
[exp]
3.5 0.9026
AT5G47240 ATNUDT8 nudix hydrolase homolog 8 (.1) Lus10040169
[exp]
4.5 0.9159
AT1G49380 cytochrome c biogenesis protei... Lus10011311
[exp]
6.5 0.9165
AT2G31040 ATP synthase protein I -relate... Lus10020702
[exp]
6.5 0.8909
AT2G39000 Acyl-CoA N-acyltransferases (N... Lus10009229
[exp]
10.2 0.9010
Lus10018660
[exp]
13.7 0.8636
AT1G32540 LOL1 lsd one like 1 (.1.2.3) Lus10030969
[exp]
13.7 0.9012
AT2G32400 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutam... Lus10015118
[exp]
14.7 0.8520

Lus10019224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.