Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) AT2G29590 95 / 3e-25 Thioesterase superfamily protein (.1) AT3G61200 67 / 2e-14 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004288 [exp] 313 / 2e-111 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10018205 [exp] 97 / 8e-26 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 92 / 5e-24 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10018847 [exp] 77 / 7e-18 AT3G61200 149 / 4e-46 Thioesterase superfamily protein (.1) Lus10000809 [exp] 74 / 4e-16 AT3G61200 135 / 3e-39 Thioesterase superfamily protein (.1) Lus10006834 [exp] 68 / 9e-15 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10006837 [exp] 62 / 1e-12 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10037583 [exp] 61 / 5e-12 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134066 [exp] 268 / 2e-93 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 226 / 6e-77 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 91 / 7e-24 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.002G155500 [exp] 72 / 3e-16 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1) Potri.003G051900 [exp] 57 / 6e-11 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10019228 pacid=23141421 polypeptide=Lus10019228 locus=Lus10019228.g ID=Lus10019228.BGIv1.0 annot-version=v1.0 ATGGATTTGGAGAGCGTAAGAAGGTATCTGGAGAAAGGAAGCGGCATCATCGAAGACGATGGAGAAGACAAGAACAGATCGGCCATCGAAGCTATTCCTT ACAGGTTCTTCGAGCGGTTCATCATGCAAGGTCTCCAAGTCGATCTCGTCGAACCCGGCCGCGTCATTTGCTCCATGAAAGTCCCACCTCGTCTCCTGAA CGGCGGGAACTTCTTGCACGGCGGAGCTACGGCAACTCTGGTTGATTTGGTTGGGTCAGCTGTGATTTTCACTGTTGGAGCTCCCCAGACTGGAGTCTCT GTTGAAATCAACGTCTCATATTTGGATGCTGCTTATGTTGACGATGAGATCGAGATCGAAGCCAAGATTCTGCGAGTCGGGAAGGCAGTTGGAGTCGTGA GCGTAGAGTTAAGGAAGAAGAAGACCGGGAAACTCATCGCGCAGGGGCGTCATACCAAGTATCTTGCTGTATCTAGCAAATTGTAA
AA sequence Show only first row Show all	>Lus10019228 pacid=23141421 polypeptide=Lus10019228 locus=Lus10019228.g ID=Lus10019228.BGIv1.0 annot-version=v1.0 MDLESVRRYLEKGSGIIEDDGEDKNRSAIEAIPYRFFERFIMQGLQVDLVEPGRVICSMKVPPRLLNGGNFLHGGATATLVDLVGSAVIFTVGAPQTGVS VEINVSYLDAAYVDDEIEIEAKILRVGKAVGVVSVELRKKKTGKLIAQGRHTKYLAVSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	0	1
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	3.2	0.8767
AT1G25682			Family of unknown function (DU...		Lus10034268 [exp]	6.5	0.8660
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	7.3	0.8775
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	13.4	0.8495
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	16.6	0.8756
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	16.9	0.8498
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	20.8	0.8504
AT5G04910			unknown protein		Lus10008941 [exp]	21.4	0.8414
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	21.5	0.8555
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	22.4	0.8688

Compare expression of checked genes

Lus10019228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.