Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23490 651 / 0 unknown protein AT5G08440 647 / 0 unknown protein AT5G23510 291 / 4e-91 unknown protein AT3G03560 206 / 4e-57 unknown protein AT1G20925 199 / 2e-55 Auxin efflux carrier family protein (.1) AT1G76520 185 / 5e-51 Auxin efflux carrier family protein (.1.2) AT1G76530 171 / 6e-46 Auxin efflux carrier family protein (.1) AT2G17500 169 / 2e-45 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 150 / 5e-39 Auxin efflux carrier family protein (.1) AT1G71090 96 / 2e-20 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004286 [exp] 1321 / 0 AT5G23490 622 / 0.0 unknown protein Lus10004287 [exp] 300 / 2e-92 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 203 / 3e-57 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10005694 [exp] 196 / 1e-53 AT3G03560 501 / 3e-174 unknown protein Lus10012708 [exp] 178 / 2e-48 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 177 / 3e-48 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10020297 [exp] 181 / 1e-46 AT3G03560 489 / 3e-164 unknown protein Lus10035978 [exp] 164 / 1e-43 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 160 / 8e-40 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133700 [exp] 804 / 0 AT5G23490 627 / 0.0 unknown protein Potri.013G073400 [exp] 260 / 3e-76 AT3G03560 568 / 0.0 unknown protein Potri.001G456300 [exp] 219 / 9e-63 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 209 / 3e-59 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.003G108100 [exp] 202 / 1e-56 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 200 / 2e-56 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.001G125501 [exp] 193 / 2e-53 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 177 / 4e-48 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 171 / 3e-46 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 168 / 5e-45 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10019229 pacid=23141341 polypeptide=Lus10019229 locus=Lus10019229.g ID=Lus10019229.BGIv1.0 annot-version=v1.0 ATGGCGGGGATGGAGCTTAGTAGTCGCGGCGGCGGGAATGAATTCCCCTCATCCAATTCGAATTTCTCCAACCACAACAGTGATAGCTTGTTTCAGGTAA TGAAGGCAGTTGAAGCGGCCGAAGCCACGATCAAACAGCAGGTGTGGGGAAGTCTGATCTCCGATTTTGTTTGGAACGGGACTCTTCTTCTTTACCTTGC AGTAGTGGATTTCTTGATTTTTCGGTTGCTTGAAGGAATTTCTGGTTCCTCTGGTTTGTTAATGCTGGTTGCTCACATTTCCCAGGTAGAAGAAAATACT CGTTTGAGAGCTGAACTCCATAAGACAACCGAGGAGCTCGAGAAAGCTAAAATAGGTGAGCCCATGGCCCAAGGATCACATTCTACCCCTCCATGGAATG GACGGATTCAAAGTCCTTATGCAGTTTACCAGTCGGAATTGATAGGTAATCCCGAGGATAGGGCTAGGAGCATGAATAGCAACGCTGCAGTTGATCCATA TGGTATGATGGTTTCTCATCAAGGGTCTAAGGCCGGTACTGAAGATCGTGTAGAAAGCTACTCTGAAAGAAGCAACATTAATGGGAGACTGAAGGCTTCT CCTGATGCTCATGCACCAGATGGTTCCAATGTCTCTCGGTTTTCTTCACCGTCCCTACCGTCTGTTTCTCCTGGGAGGTATCAAATGGAAGGAGACTATG AACCACAAGCCAATGTTTCTAGTCGTGGCGCCATGCAAATGGCTGAAGTGAATAATTCCAATAGCCTTTTGAAACAGGATTTTGCTTTCAAGATTCGTGA GCATGAAGAAGAGACAATACAATTACGGAAACGTCTTGCTGATTATTCGGTCAAGGAAGCTCAAATTCGGAATGAAAAGTATGTTTTGGAGAAGCGTATT GCTTATATGCGTCTGGCCTTTGATCAACAGCAGCAGGATCTAGTTGATGCTGCATCTAAAGCTCTTTCGTATAGGCAAGACATCATCGAAGAAAATATAC GGCTTACATATGAACTGCAGGCATGTTTGGCACAAATTGGATTAAGGCATAACTATCAAGTGCAGGCTGCTCAACAAGAAAGATCGACATTTGTGTCTTC TCTTATGCCACTTCTAGCTGAGTATTCATTGCAGCCACCAGTCCCAGATGCTCAGTCAATTGTCAGCAATGTCAGGGTCCTATTCAGACATCTACAAGAA AAGCTCATACTTACGGAGTCAAAGCTCAAGGAGTCCCAATATCAGTTGGCGCCATGGAACTCAGATGTGAGCCATTCTAATGCTACATTGCAGTCCCCTG CTCATTCGGTGGGGGTTGGAATGGTGACTACAGCTGCTGATAAGAATGGTCTCGAGTTGGTTCCTCAACAAACATATTCTCGTGTAAATGCACCAGTGAC ATCTTCAGATTCTCAAATAGCAACCGATTGGGACACCGCTAGTAATCAACAAAGTGGATTGAGAGGTGGTGGTGCCAAAAATCTCGACATGGATGATGCT GGGAAATATTCACCTCTTGCAAGCAGGAATTCTGCTGCTCAAGATATGCCAGAACAATTTGCAATTACGAATGCCATGCAATATAACACAGAGAACACTA AACAAGTAACATTTCGTGATTCTGTCAGCAATAGCGAGATGGATGACCTTGAAGCTGATGGTCAGCAAAATGACAGAGAAATTCAGTCGAATTGGACATC AGGAACTCCCTACACTACTAATGTCGATGATCCTACCTCTTCATATTCCCCTTATCTGCCTCCTGTCCTTGAAGAACCTTCTTCTTCATTTTCTGAGGCT GCCGATGATGATCCTTTACCAGCGATCGAAGGCCTTCAAATTTCAGGCGAAGCATTTCCTGGACAAGAGCTACAGGCATCAGGGTACTCTATCAATGGAA CAACTAGTTGTAACTTTGAGTGGGTACGTCATTTCGAAGATGGCTCTGTTGATTATATTGATGGAGCAAAACAACCAAACTATCTTGTCACTGCCGATGA TGTTGATACATATCTTGCTATAGAAGTCCATCCCCTGGATGATCGTAAGCGCAAGGGAGAACTGGTCAAGGTCTTTGCAAATGAGAACAGAAAGATTGCT TGTGATGCTGAAATGCAGAGCCATATTGAGAGGACTCTTTCCAATGGTCACGCCATATACAAAGTTTCGTTATCAGCGAATTATCTCGACATTTGGGAAC CAGCCACTTTGGTCATCAAGAGGGACAGTTACAATATCAAGTGTAGCACCCCAAATGGGGCTGTGATCAGTGAGAAGTTTTCGTCCAAGACCAGCGTTTC TATCCCTTATGGACATCCTACGGAGTTCGTTGTAAATGGTGCGACCGGAGGCCAGCATCTGCTACGAGCAGATAATGACTCGACAGAAGTTAGCTGTGTA AGAGATGCTATTGTGCTTACCATGAGACTGTTCATCATAAAGGTACAAAAGATTGTTGGATTCGCAGTGGGACTAATTCCTCATATGCAAGGACTGCTGG TTGGTGATAAGGCTCCCCTACGAGTTATTGAAGAATCAGCTTCTCTGCTAGGAGACGCTGCTATTCCGACGATCACATTGCTCGTGGGAGCGAATCTCGT CAAAGGTCTGAAAGGGTCCGATGTGCGGCCACCTGTGATTATCGGGATCACGGCGATACGATACATCGTGCTGCCGTTGACCGGAATCGGCATCGTGAAG TCAGCAGTTCATTTGGGGCTAGTGCATCGAGATCCGCTGTATCAATTTGTTCTCTTGCTTCAGTTTGCAGTTCCTCCGGCCATAAACATCGGTACGATAA GCCAATTGTTCGGGACCGGGGAGAGCGAGTGTTTGGTGATTCTTCTGGTGAGTTTCGCTCTGGCATCAGTTGCAGTAACAATTTGGTCCGCAATCTTCAT GTGGATGGTAGCATAG
AA sequence Show only first row Show all	>Lus10019229 pacid=23141341 polypeptide=Lus10019229 locus=Lus10019229.g ID=Lus10019229.BGIv1.0 annot-version=v1.0 MAGMELSSRGGGNEFPSSNSNFSNHNSDSLFQVMKAVEAAEATIKQQVWGSLISDFVWNGTLLLYLAVVDFLIFRLLEGISGSSGLLMLVAHISQVEENT RLRAELHKTTEELEKAKIGEPMAQGSHSTPPWNGRIQSPYAVYQSELIGNPEDRARSMNSNAAVDPYGMMVSHQGSKAGTEDRVESYSERSNINGRLKAS PDAHAPDGSNVSRFSSPSLPSVSPGRYQMEGDYEPQANVSSRGAMQMAEVNNSNSLLKQDFAFKIREHEEETIQLRKRLADYSVKEAQIRNEKYVLEKRI AYMRLAFDQQQQDLVDAASKALSYRQDIIEENIRLTYELQACLAQIGLRHNYQVQAAQQERSTFVSSLMPLLAEYSLQPPVPDAQSIVSNVRVLFRHLQE KLILTESKLKESQYQLAPWNSDVSHSNATLQSPAHSVGVGMVTTAADKNGLELVPQQTYSRVNAPVTSSDSQIATDWDTASNQQSGLRGGGAKNLDMDDA GKYSPLASRNSAAQDMPEQFAITNAMQYNTENTKQVTFRDSVSNSEMDDLEADGQQNDREIQSNWTSGTPYTTNVDDPTSSYSPYLPPVLEEPSSSFSEA ADDDPLPAIEGLQISGEAFPGQELQASGYSINGTTSCNFEWVRHFEDGSVDYIDGAKQPNYLVTADDVDTYLAIEVHPLDDRKRKGELVKVFANENRKIA CDAEMQSHIERTLSNGHAIYKVSLSANYLDIWEPATLVIKRDSYNIKCSTPNGAVISEKFSSKTSVSIPYGHPTEFVVNGATGGQHLLRADNDSTEVSCV RDAIVLTMRLFIIKVQKIVGFAVGLIPHMQGLLVGDKAPLRVIEESASLLGDAAIPTITLLVGANLVKGLKGSDVRPPVIIGITAIRYIVLPLTGIGIVK SAVHLGLVHRDPLYQFVLLLQFAVPPAINIGTISQLFGTGESECLVILLVSFALASVAVTIWSAIFMWMVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23490			unknown protein		Lus10019229 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	1.4	0.8996
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	3.5	0.8748
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	5.0	0.8243
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	6.0	0.8877
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	6.3	0.8710
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034562 [exp]	6.9	0.7979
AT3G20720			unknown protein		Lus10011166 [exp]	7.5	0.8590
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	7.7	0.8598
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	8.1	0.8606
					Lus10029801 [exp]	9.2	0.8441

Compare expression of checked genes

Lus10019229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.