Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69480 660 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 562 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 559 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 552 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 545 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 544 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 511 / 7e-173 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 507 / 2e-171 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 491 / 8e-166 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 357 / 1e-113 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004285 [exp] 647 / 0 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 531 / 1e-180 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 512 / 2e-173 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 509 / 2e-172 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 504 / 2e-170 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 488 / 2e-164 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 478 / 2e-160 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 392 / 1e-131 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 347 / 5e-115 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090300 [exp] 635 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 563 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 562 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 546 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 539 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 538 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 520 / 7e-177 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 357 / 6e-114 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 347 / 4e-110 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 338 / 2e-106 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10019230 pacid=23141330 polypeptide=Lus10019230 locus=Lus10019230.g ID=Lus10019230.BGIv1.0 annot-version=v1.0 ATGGACTCATCATTTCCACTGAGGAAGAACAGCTTCAACGATCCAGAGGATTCTTCCTCCATCAGCAGTAATGGCTCTGCAGAAGTTCATACCACCACCA TTACTACTACTACTGATCACGAAGAAAATTCGCAGATCCTGGAACGTGTGAAGATCGAAAAACCAAGCCATCAAATTTCGCCATTGACTGCCATTAAAGG TGTTTTCAAGGACTCGAGAGAAGTCGAGCTGAGCCAAGTGAAATGCCAGCTAAGAGCTGCCTTCATTGAGTTCTACCACAAGCTCCGCCTTCTCAGCCAT TATAGTTACATGAACCTCGCAGCATTCTCCAGGATCTTGAACAAGTATGAGAAGGTCGCTTCGAGGAGGGTGGCTTCATCCTATATGAAAGTCGTAGAGA AGTCGTCTCTTGGCAGCTCGGACGAGGTAAGGGATCTCCTCGACAGCGTCGAGGCTACATTCATCAAGCACTTCTCAGGCTCCAATTACAAGAAAGGTAG GAGACTGTTGAGGCCGAAATCCAAGAAGGAGAAGCACATCGTAACTTTCCTTTCGGGCTTCTTTTCTGGATGCTCGGTTGCTCTGTTGGTAGCGGTTGTG TTGAGAATACAAACGCAGAAGCTGCTGACAAAGGATGAGGGTGCTTTGTATTTGGTCAACATCTTCCCACTTTACAGGCAATACAATCTCGGGGGCTTAT TCGGGTACGTTGTCCTGCACATGCTGGTGAACGCAGCTGATGTATACTTCTGGAGGCGATACCGGGTGAACTATCCGTTCATTTTCGGGATCGAGCGAGG GACCGAGTTAGACCATCGACAAGTGTTCTTCCTTAGCAGCGGCCTTGCGTTCCTCGTACTAGCTAGCTTGCTCTGTAACTTGTACTTGGACTTGAGCTCC AACGCTACCAAGCATAAGCAACTCACTGAGCTCATGCCTCTGGGTTTGATCTTTGTGGTGGTTGCAATACTCCTCTGCCCATTCCACGGGCTGTATCGCT CGAGCCGATTCTTCTTCGTTCGATGCCTGTTTCGCACCCTTTGTGCTCCCTTGTTCAAGGAAAGACTTTCCGACTTCTACTTAGCTGACAACCTAACGAG CCAGTTCCAAGCGTTCCGGTGCCTCGAGCTCTACATATGCTACTATGGGCTAGGCGAGTCCTTGCGGAGGCAGGAAAAATGCCACAGCCACGGCATCTAC AACGCCCTCTACTTCATCGTCGCAATCGTACCATTCTGGATCCGCTTCGCCCAGTGCCTCCGCCGTTTCCTCGAGGAACGAGAGGCCACCCACGCGTTCA ACACCCTGAAATACCTCTCGACGATCGTAGCAGTCGTGCTCCGGACCACCTTCGAGCTCAAACGTGGCACCACCCGGATGGCGCTGGCACTCAGCAGCTC AGTTGCCGCGGCAGTATTCAACGCCTACTGGGACGTGGCGGTCGATTGGGGGCTTCTGAGACGGAACTCGAAGAACCGGTTTCTTCGAGACAGGATCTTG GTCCCTCGAAAGAGCGTATACTTCGTGGCGATGGGCGTGGATGTCGTTCTGAGGCTTGCTTGGATGCAATTGGTGCTGGAATTGAACCTGAGGAGTGTTC ATAAGATGGCGGCCTTGAGTGTTATGTCTTGTTTGGAGATTGTGCGTAGGGGTTTGTGGAACTTCTTTAGGCTTGAGAATGAGCATCTCAACAATGTTGG GAAGTACAGGGCTTTTAACCGTGTTCCTCTACCTTTTAGCTATTGTGATCCTGATGATGATGACAAGGATGACTAG
AA sequence Show only first row Show all	>Lus10019230 pacid=23141330 polypeptide=Lus10019230 locus=Lus10019230.g ID=Lus10019230.BGIv1.0 annot-version=v1.0 MDSSFPLRKNSFNDPEDSSSISSNGSAEVHTTTITTTTDHEENSQILERVKIEKPSHQISPLTAIKGVFKDSREVELSQVKCQLRAAFIEFYHKLRLLSH YSYMNLAAFSRILNKYEKVASRRVASSYMKVVEKSSLGSSDEVRDLLDSVEATFIKHFSGSNYKKGRRLLRPKSKKEKHIVTFLSGFFSGCSVALLVAVV LRIQTQKLLTKDEGALYLVNIFPLYRQYNLGGLFGYVVLHMLVNAADVYFWRRYRVNYPFIFGIERGTELDHRQVFFLSSGLAFLVLASLLCNLYLDLSS NATKHKQLTELMPLGLIFVVVAILLCPFHGLYRSSRFFFVRCLFRTLCAPLFKERLSDFYLADNLTSQFQAFRCLELYICYYGLGESLRRQEKCHSHGIY NALYFIVAIVPFWIRFAQCLRRFLEEREATHAFNTLKYLSTIVAVVLRTTFELKRGTTRMALALSSSVAAAVFNAYWDVAVDWGLLRRNSKNRFLRDRIL VPRKSVYFVAMGVDVVLRLAWMQLVLELNLRSVHKMAALSVMSCLEIVRRGLWNFFRLENEHLNNVGKYRAFNRVPLPFSYCDPDDDDKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	1.4	0.8364
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	1.7	0.8629
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	4.5	0.7688
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	6.6	0.7766
AT5G36000			unknown protein		Lus10010122 [exp]	17.1	0.8099
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	17.3	0.7194
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10015992 [exp]	22.9	0.6162
AT3G24130			Pectin lyase-like superfamily ...		Lus10007136 [exp]	26.1	0.6753
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	51.8	0.7138
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	60.1	0.6915

Compare expression of checked genes

Lus10019230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.