Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 798 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 743 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 701 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 696 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 686 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 651 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 640 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 224 / 5e-68 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004281 [exp] 1250 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 928 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 857 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 695 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 687 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 619 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 615 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 600 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023106 [exp] 595 / 0 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 890 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 838 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 719 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 711 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 690 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 668 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 665 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 577 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10019231 pacid=23141407 polypeptide=Lus10019231 locus=Lus10019231.g ID=Lus10019231.BGIv1.0 annot-version=v1.0 ATGGTGATGAAGAGCTCGTCTGCAAAAATAGCTTTACTGAGCTGGGGTTTCTTTCTTTTTTCGACAGTCTGTTTCGCCGCCGTTGATAGTGCTTCCGCCG CCGTCGCCGGCGTTGGCATGAAGGCTTCGTCTAGGTTCATCGTCATTCTCTCCCCGACTATGGAAAATCGAGTAACCAACAGCAGTTCAGGTTTAGCAGT GCAGCTCGATCGGGAAAAAGATCCACAAAGGGTGATAATCGACAATGGAATCGTTCGAGTTACGTTCGCCAGCCCAGAGGGACACATCATCGGGGTCAGA TACAACGGAATCAGCAACGTTCTCGAATCCGATAATGACTACGACAATCGTGGCTACTGGGACGTCGTCTGGAACAAGCCTGGTGCAAAGAATGACTTCG ACAAACTGGCAGCGTCGCGTTTCAGACTGGTGATGCAAGATGATGACCAGATCGAAGTCTCCTTCTCCAAGAAATGGAAGCCTGAAGATTACTCAGACAC AGTTCCGTTGAACGTCGACAAGAGGTACATATTGCGGAAGGGGAGCTCCGGGATTTACATGTACACGATCCTCGAGCGGCTGGATGGGTGGCCTGATGTT GATATGGATCAGATCAGAGTTGTTTTCAAGCTCCAGGACAAACTGTTTCGTTACATGGCAATATCGGATGAGAGGCAGAGAGTGATGCCGACGGTAAAGG ATCGAGAGAGTGGTCGGGCTTTAGACTATCCGGAGGCTGTTCTCTTGACTCGTCCCAGAAATCCTGCTATGAGAGGCGAGGTAGATGACAAGTACCAGTA CTCGTGTGAGGATCAGGACAACAAGGTTCATGGATGGATATCGGAGGATCGTCGAGTGGGGTTCTGGATGATCACTCCTAGTGATGAGTTTCGAGTTGGG GGGCCGGTCAAGCAGGATCTTACCTCCCATGTCGGCCCAACTGTTCTCAATATGTTCACTAGTACTCATTATGCTGGAAAGGACATGAATACTGAATATA GAAATGGTGAGCCCTGGAAGAAAGTTCTTGGCCCGGTTTTTGTTTACCTGAATGCAGGAAGAACTTCGAAACTTTGGCGAGATGCTAAAAGACGGATGCG CAGGGAAGTAAAGAGCTGGCCGTACCACTTTGTTAACTCGGAAGATGTCCCTTCAGCTGATCAACGAGGAACTGTCGTTGGCCAACTATTACATCGTGAC AGATATACCAATGAGAATAGGTTGACGTATGCTGGATCTGCATATGTTGGGTTGGCAATGCCAGGAGAGGAAGGATCATGGGAAACTGATGCCAAGGGGT ATCAATTCTGGACTCGAGCTGACGAGCAAGGCAAGTTCTCAATTGACAACATCAGAGCTGGAACTTACAGCTTCTACGGTTGGGTCCCTGGAATCATTGG TGAAAACAAGTACAAAGCTAACATCACAATTCGTCCCGGTAGGTTCCTTCTCCAGCAGCCATTACTTCGAAAAACCTTCACCGTTTTCAGTCCTAACGAT CAGTACAATTCAGGATCGAAGATCGACTTAGGCATGCTTGTGTATAACCCACCAAGGAACGGACCAACTCTCTGGGAAATTGGCATTCCTGACAGGAAAG CTGCTGAGTTCTATGTTCCTGATGCTTACCCTACACTAATGAATAGGCTCTACGCCAATCGCCCGACTGAAAGATTCAGACAATATGGATTATGGGCGCG ATATACCGACAAGTACCCAAAGCACGATCTCGTCTACGAAGTTGGTGTCAGTAATTTCTTCGAGGACTGGTTCTATGCTCATGTCCCACGACGAGTAGGG AACAATACTTACAGGGCAACCACGTGGCAGATCAAGTTCGGTCTTCCGAAACCTGACAGAAGCGGAGACTACACGCTTCAGCTGGCTCTAGCTTCAGCAG CGAACGCAGAGATTCAGGTGCGTTTCAACGATTGGAATACTTCGGGGAAGCCTCTGTTCACGACGGGGCTAATAGGGAAAGATAACGCCATAGCGAGACA CGGAATCCACGGCTTGTACTGGCTGTTCAGCATCTCTGTGCCATGCAGCCGGGTTGTTGATGGGAAGAACTCCGTTTACTTGACTCAGACGAGAACTGAC CGGCCGTTTAACGGCGTTATGTATGATTACATTCGTTTGGAAGGGCCTAAGTGGAAGTTTTGA
AA sequence Show only first row Show all	>Lus10019231 pacid=23141407 polypeptide=Lus10019231 locus=Lus10019231.g ID=Lus10019231.BGIv1.0 annot-version=v1.0 MVMKSSSAKIALLSWGFFLFSTVCFAAVDSASAAVAGVGMKASSRFIVILSPTMENRVTNSSSGLAVQLDREKDPQRVIIDNGIVRVTFASPEGHIIGVR YNGISNVLESDNDYDNRGYWDVVWNKPGAKNDFDKLAASRFRLVMQDDDQIEVSFSKKWKPEDYSDTVPLNVDKRYILRKGSSGIYMYTILERLDGWPDV DMDQIRVVFKLQDKLFRYMAISDERQRVMPTVKDRESGRALDYPEAVLLTRPRNPAMRGEVDDKYQYSCEDQDNKVHGWISEDRRVGFWMITPSDEFRVG GPVKQDLTSHVGPTVLNMFTSTHYAGKDMNTEYRNGEPWKKVLGPVFVYLNAGRTSKLWRDAKRRMRREVKSWPYHFVNSEDVPSADQRGTVVGQLLHRD RYTNENRLTYAGSAYVGLAMPGEEGSWETDAKGYQFWTRADEQGKFSIDNIRAGTYSFYGWVPGIIGENKYKANITIRPGRFLLQQPLLRKTFTVFSPND QYNSGSKIDLGMLVYNPPRNGPTLWEIGIPDRKAAEFYVPDAYPTLMNRLYANRPTERFRQYGLWARYTDKYPKHDLVYEVGVSNFFEDWFYAHVPRRVG NNTYRATTWQIKFGLPKPDRSGDYTLQLALASAANAEIQVRFNDWNTSGKPLFTTGLIGKDNAIARHGIHGLYWLFSISVPCSRVVDGKNSVYLTQTRTD RPFNGVMYDYIRLEGPKWKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	2.4	0.9592
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	3.2	0.9523
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	5.5	0.9245
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	5.7	0.9411
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	6.5	0.9312
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	6.6	0.9409
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	7.7	0.9403
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	8.8	0.9368
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	9.5	0.9248
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10014613 [exp]	9.6	0.8493

Compare expression of checked genes

Lus10019231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.