Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65600 72 / 2e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 71 / 8e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 47 / 9e-07 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004279 [exp] 216 / 5e-67 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007073 [exp] 91 / 7e-23 AT5G10530 77 / 3e-16 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 93 / 1e-22 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 91 / 1e-21 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 88 / 8e-21 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 77 / 5e-17 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042309 [exp] 75 / 3e-16 AT5G10530 238 / 2e-72 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007076 [exp] 72 / 5e-16 AT5G10530 79 / 6e-17 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 72 / 3e-15 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 124 / 2e-33 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 90 / 2e-21 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 90 / 2e-21 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 86 / 5e-20 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 84 / 2e-19 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 82 / 1e-18 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 81 / 2e-18 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 71 / 9e-15 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 69 / 3e-14 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 69 / 3e-14 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10019234 pacid=23141391 polypeptide=Lus10019234 locus=Lus10019234.g ID=Lus10019234.BGIv1.0 annot-version=v1.0 ATGACTCATTATCTTCCGATCATCACCGTCGTCACGATCTTCATATTCTTACCATCCCCTGCAACTTCCGTTTCATTCAACTTCACAACCTTCAGCCCAA ACACGATGAACGACATCTTCTTCCAAGGCGACTCCTTTGCCTCCAATGGCGCCCTCCAGTTGACCAAGAACGCCGTCGGCGAGAGCCTCCGTAGCAGCGC CGGACGCGTCACTTCCCGCCAGCTCATCCCTCTCTGGGACTCCTCAACAGGGGAGGTTACCAATTTCACTACCCACTTCACTTTCACGATGAAAGCTGTC AACTTGTCCGAAAACTACGGCGAGGGGATGACTTTTTTCCTCTCGCCGGCGAACTCTGAGATTCCGGCGAACTCCACCGGCGGGTACCTCGCTCTGCGGC GCCTCGCTCGTCTTGTGCACCCCGGAACCCGCGTAGACCCCCGCCAAGAGCCATAA
AA sequence Show only first row Show all	>Lus10019234 pacid=23141391 polypeptide=Lus10019234 locus=Lus10019234.g ID=Lus10019234.BGIv1.0 annot-version=v1.0 MTHYLPIITVVTIFIFLPSPATSVSFNFTTFSPNTMNDIFFQGDSFASNGALQLTKNAVGESLRSSAGRVTSRQLIPLWDSSTGEVTNFTTHFTFTMKAV NLSENYGEGMTFFLSPANSEIPANSTGGYLALRRLARLVHPGTRVDPRQEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	0	1
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	3.6	0.8814
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10041280 [exp]	4.5	0.8716
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	7.1	0.8655
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	12.7	0.8214
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	25.0	0.8611
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10032332 [exp]	29.0	0.8647
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	48.3	0.7629
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	64.3	0.8181
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	74.0	0.8167
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	75.5	0.7380

Compare expression of checked genes

Lus10019234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.