Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20550 290 / 8e-97 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT2G24410 89 / 4e-22 unknown protein AT5G38840 69 / 2e-12 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 42 / 0.0003 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004278 [exp] 476 / 3e-169 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 70 / 7e-13 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 69 / 2e-12 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 45 / 6e-05 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 42 / 0.0006 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420400 [exp] 312 / 3e-104 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 248 / 1e-80 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 65 / 3e-11 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 45 / 6e-05 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 45 / 6e-05 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10019235 pacid=23141412 polypeptide=Lus10019235 locus=Lus10019235.g ID=Lus10019235.BGIv1.0 annot-version=v1.0 ATGGGTCGGCATTTGTCCAATCACTCACCATCCCCTGACAGAGGTCGGCGGCGGCGGAGGAGCCCTCCACCTGAAGAAAGGTCGCCAGCGCGACAGAGAA GTTCCGGCGGAGATGCTCAGCGTTCGAGTCGTGCTAGGTCTTCGAAGCGCGAAACGTCGCGTTCGCGTTCACCATCGGTGAAAGAGAGAAAATCCTCCCC CAGGCGTGAAAGGTCTGGTTCTCCTCTTTCTCCACGTAGTAGAAGATTGAGTCTAGCTGCTGCAGAGAAAGAGGCGGATAGAAGGACGGATAGGGACCAT GGAAGGAATCACGGCAGGGAAAAGGATAGGGCTAGGGACAGAGAGAGTTCAAAGGTGGCTGAGAGGGGTACGAGTAGAGATAGAGTTACAGATAAGGGAA ATAGAGCTGAGAGGAAGGAGAGAAGACATGTAACAGATGAAATGGAGGAAAAACCATCTAGAGTTAGGCATGAACGTTCTGCTTCTCCTCCATCCGATCG CCGCCAAAGGAGCAGACGGAGGTCTCATTCACCTCAAGCATCGGCTGAGAACAAACAACGTGATGAGGTAGCTGATAGAAGGAATGATGAGGATGATTCT GTAGCCAAGATGAAAGCTGCTGAAGAGGCCTTGGAATCGAAAAAGCAAAAGCCGTCGTTTGAGCTCTCAGGGAAGCTTGCAGCAGAAACAAATAGAGTTC GAGGTATCACATTGCTGTTCAATGAGCCACCAGAGGCCCGAAAACCCAATATAAGATGGAGGCTTTATGTTTTCAAGGGCGGTGAAGTGCTTAATGAACC ACTATATATACACCGGCAGAGCTGTTATCTTTTCGGTAGAGAGAGGAGAGTAGCAGATATCCCAACAGACCACCCATCCTGCAGCAAGCAACACGCTGTG ATTCAGTTTCGGCAAATAGAGAAGGAAGAAGATGATGGTACTATATCTAAGCAAGTAAGGCCATACGTAATGGACCTTGGAAGCACAAACAAAACATTCA TTAATGAAAACCCAATTGAGCCTCAGCGTTACTATGAACTTTTCGAAAGAGATACAATTAAATTTGGTAACAGTAGGTAG
AA sequence Show only first row Show all	>Lus10019235 pacid=23141412 polypeptide=Lus10019235 locus=Lus10019235.g ID=Lus10019235.BGIv1.0 annot-version=v1.0 MGRHLSNHSPSPDRGRRRRRSPPPEERSPARQRSSGGDAQRSSRARSSKRETSRSRSPSVKERKSSPRRERSGSPLSPRSRRLSLAAAEKEADRRTDRDH GRNHGREKDRARDRESSKVAERGTSRDRVTDKGNRAERKERRHVTDEMEEKPSRVRHERSASPPSDRRQRSRRRSHSPQASAENKQRDEVADRRNDEDDS VAKMKAAEEALESKKQKPSFELSGKLAAETNRVRGITLLFNEPPEARKPNIRWRLYVFKGGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAV IQFRQIEKEEDDGTISKQVRPYVMDLGSTNKTFINENPIEPQRYYELFERDTIKFGNSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	0	1
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	5.9	0.8907
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	5.9	0.9003
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	7.7	0.8953
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	12.0	0.8671
AT1G50660			unknown protein		Lus10021521 [exp]	12.5	0.8952
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	13.6	0.8989
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	14.5	0.8907
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	15.6	0.8888
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	18.5	0.8901
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	19.1	0.8463

Compare expression of checked genes

Lus10019235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.