Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65620 1070 / 0 Zincin-like metalloproteases family protein (.1) AT5G10540 1066 / 0 Zincin-like metalloproteases family protein (.1) AT1G67690 163 / 1e-41 Zincin-like metalloproteases family protein (.1) AT2G22640 139 / 4e-39 ATBRK1, BRK1, HSPC300 BRICK1, putative (.1) AT5G51540 118 / 4e-27 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004276 [exp] 1431 / 0 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 169 / 2e-43 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 156 / 2e-39 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 115 / 2e-26 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 110 / 2e-24 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G010100 [exp] 1109 / 0 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 1070 / 0 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.009G151300 [exp] 181 / 1e-51 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 164 / 8e-42 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010000 [exp] 122 / 1e-32 AT2G22640 81 / 2e-21 BRICK1, putative (.1) Potri.015G129300 [exp] 130 / 4e-31 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10019236 pacid=23141398 polypeptide=Lus10019236 locus=Lus10019236.g ID=Lus10019236.BGIv1.0 annot-version=v1.0 ATGGGTCGAGCTAGAACAACAAGAACAACGAGAGGATTGGTGACGATCCTCATAGTCTACTTCGCCTCGTTAATAATGGCGACACGTTTCTCACTCTCTC TCCCGACTCTGTTGCTCACTCGCCAATCTCCCCGTTTTGCCCCCAACCTCCTCTTTAAACCTCGCACTTGCCCTCTCTGGTCCGCTTCTTTCTCCTTCTG CCTCCCTCCCACCTCCACCTCCTTCACTTCCTGTCCCGCCGCGAGTTCCTCTCACCGCCGCTACTCTTCCTTATCCCCTCCTCCTACCCAGCCTTCCGCA ATGGCCTCCGCAGTCTCCGCCGCTTCCAATGTCGTCGAGAATCCACTTCTGAAGGACTTCGTCTTCCCTCCGTTCGATTCCGTCCAGGCCGATCATGTCC GTCCCGGTATCCGCGCCTTGCTCAAGCAGCTCGAGAGTGAATTCGAGGAACTGGAAAAGAACGTGGAGCCGTCGTGGCCGAAGCTGGTGGAGCCGTTGGA GAAGATCGTTGATAAGCTGGCTGTCGTTTGGGGGATGGTGAATCATCTCAAGGCTGTTATGGACACTGCTGAGCTCCGAGCTGCTATTGAGGAAGTTCAG CCAGAGAAAGTGAAGTTTCAGCTCAGGTTAGGACAGAGCACGCCGATTTACAATGCGTTTAAGGCTATTCAAGAGAGTCCGGAGTGGCAGCATCTGAGTG GTGCTAGGAGAAGAATAGTCGAAGCCCAAATAAAGGAAGCGATTCTAAATGGTGTTGCTCTGGAAGATGACAAAAGAGAAGAGTTTAACAAAGTCGAGCA GGAACTGGAGAGGCTGTCTCAAAAGTTTGACGAGAACGTGTTGGATGCCACCAAGAAGTTTGAAAAGCTTGTCACGGATAAGAAAGAAATTGAAGGATTG CCAGCTACGGCACTTGGTTTAGCTGCTCAGTCTGCTGTTTCTAAGGGTCACCCTGATGCAACGTCCGAGGATGGACCCTGGATTATTACACTGGATGGAC CAAGTTTTACGTCTGTCATGCAACATGCTAAAAACCGTGGTTTGCGTGAAGAATTATATCGTGCATATGTAACACGCGCTTCAGGTGGAGATCTTGATAA CACACCCATTATTGATCAGATATTAAAGCTCAGACTGGAAAAGGCTAAGCTCCTTGGTTATAAGAACTATGCTGAGGTAAGCATGGAAACCAAAATGGCC ACCGTTGAGAAAGCACTAGAGCTTCTGGAAAAGTTGCGATCAGCTTCGTGGGATGCTGCAGTTAGAGATTTGGAAGACCTTAGATACTTTGCAAAAGCCC AAGGTGCAGCAGAAGCAGATGACTTGAAACACTGGGACATGAGCTTTTGGTCAGAGAGGCTGCGTGAGTCTAAATATGACATCAATGAGGAAGAGTTACG GCCTTATTTCTCATTGCCAAAGGTTATGGATGGCCTTTTCAATCTTGCCAACAAACTTTTTGGCATTACCATTGAAGCAGCTGATGGCCTTGCTCCTGTT TGGAACAAAGATGTGAGGTTCTATTGCGTCAAGGACTCATCAGGCTCTCCTGTTGCATACTTCTATTTTGATCCTTATTCACGTCCATCTGAGAAAAGGG GAGTCTTCCATGAGTTTGGCCATGCTCTTCAGCACATGCTTACTAAAGTGGATGAGGGTCTTGTTGCTGGAATCAGGGGAGTTGAATGGGATGCTGTGGA GCTACCTTCGCAATTTATGGAAAATTGGTGCTATCACAGAGAAACCTTGATGGGCATTGCAAAACATTTTGAAACTGGCGAAAACTTCCCAGAAGAGGTA TTCTCGAAGCTTGTGGCTGCACGAACATACAGGGCGGGTTCCCTTAGCCTTCGGCAGTTGAAATTTGCAACCCTGGATTTGGAACTGCACTTGAACTATG TACCAGGAGGATCCGAATCTATATATGATGTGGATCAAAGAGTCTCCAAGCGCACACAAATCATCCCACCATTGCCAGAAGACAGATTTCTTTGTGGCGG ATATGCAGCTGGGTACTATAGTTATAAGTGGGCTGAGGTATTGTCTGCAGATGCTTTCTCAGCTTTTGAAGATGCCGGATTAGATGACAACAAGGCTGTT GAAGAGACAGGACGCAAGTTCCGGGAGACTGTCCTCGCTCTCGGTGGTGGCAAAGCACCGCAAGAGGTGTTTGTGGAGTTCCGAGGGCGCGAACCTTCAC CAGAGGCTCTACTACGCCACAACGCAGACCACTCACGAAGAACCAAAAATCAAACAAATCCAAGTGAAATCAGTAGCAGCAGACGTAAACAAACAGCATC ATCAGTTCATCATCATCATCATTCAGCTGCAGCAATCCGAAATCTCCATTCCCGCATCCAGGAGATCGGATTCTCAACAAGTATGGCGCGCGCTGGAGGG ATCACGAACGCTGTCAACGTAGGAATCGCAGTCCAAGCTGATTGGGAGAATCGCGAGTTCATCTCTCACATCTCCCTCAACATCCGTCGCCTCTTCGATT TCCTCCTCCAATTCGAAGCTACTACCAAATCCAAATTGGCGTCGCTGAACGAGAAGCTGGATACCTTGGAGCGTCGTCTCGAGCTGCTTGAAGTCCAAGT CGGTACTGCTACGGCCAATCCTTCCCTTTTCAATACTTGA
AA sequence Show only first row Show all	>Lus10019236 pacid=23141398 polypeptide=Lus10019236 locus=Lus10019236.g ID=Lus10019236.BGIv1.0 annot-version=v1.0 MGRARTTRTTRGLVTILIVYFASLIMATRFSLSLPTLLLTRQSPRFAPNLLFKPRTCPLWSASFSFCLPPTSTSFTSCPAASSSHRRYSSLSPPPTQPSA MASAVSAASNVVENPLLKDFVFPPFDSVQADHVRPGIRALLKQLESEFEELEKNVEPSWPKLVEPLEKIVDKLAVVWGMVNHLKAVMDTAELRAAIEEVQ PEKVKFQLRLGQSTPIYNAFKAIQESPEWQHLSGARRRIVEAQIKEAILNGVALEDDKREEFNKVEQELERLSQKFDENVLDATKKFEKLVTDKKEIEGL PATALGLAAQSAVSKGHPDATSEDGPWIITLDGPSFTSVMQHAKNRGLREELYRAYVTRASGGDLDNTPIIDQILKLRLEKAKLLGYKNYAEVSMETKMA TVEKALELLEKLRSASWDAAVRDLEDLRYFAKAQGAAEADDLKHWDMSFWSERLRESKYDINEEELRPYFSLPKVMDGLFNLANKLFGITIEAADGLAPV WNKDVRFYCVKDSSGSPVAYFYFDPYSRPSEKRGVFHEFGHALQHMLTKVDEGLVAGIRGVEWDAVELPSQFMENWCYHRETLMGIAKHFETGENFPEEV FSKLVAARTYRAGSLSLRQLKFATLDLELHLNYVPGGSESIYDVDQRVSKRTQIIPPLPEDRFLCGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDNKAV EETGRKFRETVLALGGGKAPQEVFVEFRGREPSPEALLRHNADHSRRTKNQTNPSEISSSRRKQTASSVHHHHHSAAAIRNLHSRIQEIGFSTSMARAGG ITNAVNVGIAVQADWENREFISHISLNIRRLFDFLLQFEATTKSKLASLNEKLDTLERRLELLEVQVGTATANPSLFNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	0	1
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	3.5	0.8574
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	4.5	0.8684
AT5G11490			adaptin family protein (.1.2)		Lus10022125 [exp]	7.7	0.8543
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	8.8	0.8487
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	11.9	0.8665
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	12.3	0.8450
AT2G07360			SH3 domain-containing protein ...		Lus10027588 [exp]	14.5	0.8486
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	18.7	0.8406
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	19.1	0.7958
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	19.6	0.8195

Compare expression of checked genes

Lus10019236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.